Skip to content
GenomeSpy Docs
Genomic Data Examples
Search
GitHub
GenomeSpy Docs
GitHub
Introduction
Getting Started
Grammar
Grammar
Data Input
Data Input
Eager Data Sources
Lazy Data Sources
URL Templates and Multiple Files
Transform
Transform
Aggregate
AlignmentMismatches
Collect
Coverage
Cross
Displace1D
Displace2D
Filter
FilterScoredLabels
Flatten
FlattenCigar
FlattenCompressedExons
FlattenDelimited
FlattenSequence
Formula
Identifier
LinearizeGenomicCoordinate
Lookup
CoordinateLookup
MeasureText
Pileup
Project
RegexExtract
RegexFold
Sample
SetIntersection
Stack
Window
Graphical Marks
Graphical Marks
Arrow
Link
Point
Rect
Rule
Tick
Text
Conditional Encoding
View Composition
View Composition
Concat
Layer
Multiscale
Scales
Genomic Coordinates
Axes
Titles
Legends
Config And Themes
Importing Views
Expressions
Parameters
Types
Working with Sample Collections
Working with Sample Collections
Visualizing
Sample View Parameters
Aggregating Samples
Configuring Metadata Sources
Configuring App Features
Analyzing
Importing Metadata
JavaScript API
JavaScript API
API Reference
Embedding
View Hierarchy
Runtime State
Inspector
Instance, Events, and Export
Embed Options
Examples
Examples
Chromosome Ideogram from Cytobands
Indexed FASTA Six-Frame Translation
RefSeq Gene Annotations with Scored Labels
GENCODE Gene Annotations from GFF3
ASCAT Copy-Number Segmentation
Interactive ASCAT-like Purity/Ploidy Fitting
HCC1954 SV/CNV
TCGA Ovarian Cancer GISTIC2 Copy-Number Landscape
Sashimi Plot
PISA Squid Plot
PISA Interaction Matrix
PIK3CA Mutation Lollipop Plot
SPI1 Binding-QTL Dynseq Track
ClinVar Small-Variant Classifications
BAM Read Alignments
Multiple Sequence Alignment
Composing a Genome Browser
Set Intersections with an UpSet Plot
License
Genomic Data Examples
¶
The genomic data examples have moved to the
Examples
section.