Package index • MutGlyph

Plotting

oncoplot(): Draw an interactive oncoplot
lollipopPlot(): Draw an interactive protein lollipop plot
lollipopPlot2(): Compare two cohorts with an interactive protein lollipop plot
rainfallPlot(): Draw an interactive rainfall plot
gisticChromPlot(): Plot GISTIC scores across the genome

GenomeSpy specification

as_json(): Retrieve a MutGlyph GenomeSpy specification

Protein annotation

mutglyph_interpro_domains(): Retrieve representative protein domains from InterPro

Example data

pik3ca_tcga_brca: Recurrent PIK3CA mutations in TCGA-BRCA