Changelog

Source: NEWS.md

MutGlyph 0.1.0

Initial release.

Plots

• Interactive, maftools-compatible oncoplot(), including mutation and CNV layers, clinical annotations, Ti/Tv, sample and gene summaries, and mean VAF.
• rainfallPlot() with kataegis detection and regional views.
• lollipopPlot() and lollipopPlot2() for single- and two-cohort protein mutation landscapes, with custom domains and annotations.
• gisticChromPlot() for chromosome-wide amplification and deletion landscapes, custom annotations, and regional views.

Interaction and output

• Responsive GenomeSpy widgets with zooming, panning, and tooltips.
• Full-window viewing, JSON specification download, and SVG or PNG export.
• Compact columnar transport for embedded data keeps generated HTML sizes manageable.

Documentation

• Guides for oncoplots, rainfall plots, lollipop plots, and GISTIC plots.
• Reproducible examples based on maftools and TCGA-derived example data.