MutGlyph: Interactive Cancer Genomics Plots

MutGlyph creates opinionated interactive cancer genomics plots from maftools mutation data. oncoplot() deliberately imitates the familiar maftools::oncoplot() API and composition, making it an almost drop-in interactive replacement for common workflows. rainfallPlot() similarly follows maftools::rainfallPlot() and can annotate potential kataegis loci. lollipopPlot() provides both a familiar protein lollipop and a collision-aware displaced layout, accepts ordinary mutation and domain tables, and can use annotations from mutglyph_interpro_domains(). gisticChromPlot() renders maftools GISTIC objects as mirrored, zoomable amplification and deletion landscapes. GenomeSpy owns rendering and interaction in the browser.

See also

Useful links:

• https://github.com/genome-spy/MutGlyph

• https://genomespy.app/MutGlyph/

• Report bugs at https://github.com/genome-spy/MutGlyph/issues

Author

Maintainer: Kari Lavikka kari@karilavikka.fi (ORCID) [copyright holder]

Authors:

• Kari Lavikka kari@karilavikka.fi (ORCID) [copyright holder]