Index A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z A abs() (genome_spy.expr class method) acos() (genome_spy.expr class method) add_composition() (genome_spy.integrations.scanpy.pl.EmbeddingSummary method) add_dendrogram() (genome_spy.integrations.scanpy.pl.DotPlot method) (genome_spy.integrations.scanpy.pl.MatrixPlot method) add_heatmap() (genome_spy.integrations.scanpy.pl.EmbeddingSummary method) add_histogram() (genome_spy.integrations.scanpy.pl.EmbeddingSummary method) add_params() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) add_totals() (genome_spy.integrations.scanpy.pl.DotPlot method) (genome_spy.integrations.scanpy.pl.MatrixPlot method) add_tracks() (genome_spy.integrations.scanpy.pl.EmbeddingSummary method) addChrPrefix() (genome_spy.Gff3Data method) (genome_spy.LazyDataParams method) (genome_spy.TabixTsvData method) (genome_spy.VcfData method) AggregateOp (class in genome_spy) AggregateParams (class in genome_spy) Align (class in genome_spy) align() (genome_spy.FacetHeader method) (genome_spy.MarkProps method) (genome_spy.Scale method) (genome_spy.ScaleConfig method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.Title method) (genome_spy.TitleConfig method) AlignmentMismatchesParams (class in genome_spy) anchor() (genome_spy.FacetHeader method) (genome_spy.LegendLayout method) (genome_spy.LegendRegionLayout method) (genome_spy.StyleConfig method) (genome_spy.Title method) (genome_spy.TitleConfig method) (genome_spy.ViewportSizeDef method) anchorHeight() (genome_spy.Displace2DParams method) (genome_spy.TransformParams method) anchorWidth() (genome_spy.Displace2DParams method) (genome_spy.TransformParams method) and_() (genome_spy.SelectionPredicateDefinition method) (genome_spy.SelectionPredicateOperand method) Angle (class in genome_spy) angle() (genome_spy.Encoding method) (genome_spy.FacetHeader method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RangeConfig method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.Title method) (genome_spy.TitleConfig method) animationHalfLife() (genome_spy.Displace2DParams method) (genome_spy.TransformParams method) AnnDataProjectionError annotate() (genome_spy.CoreRootSpec method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) arcFadingDistance() (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) arcHeightFactor() (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) arrow() (genome_spy.GenomeSpyConfig method) ArrowConfig (class in genome_spy) ArrowDirection (class in genome_spy) ArrowProps (class in genome_spy) ArrowRelativeSize (class in genome_spy) ArrowSize (class in genome_spy) as_() (genome_spy.AggregateParams method) (genome_spy.CoordinateLookupParams method) (genome_spy.CoverageParams method) (genome_spy.DendrogramParams method) (genome_spy.Displace1DParams method) (genome_spy.Displace2DParams method) (genome_spy.ExplicitlyOrderedDendrogramParams method) (genome_spy.FlattenCompressedExonsParams method) (genome_spy.FlattenDelimitedParams method) (genome_spy.FlattenParams method) (genome_spy.FlattenSequenceParams method) (genome_spy.FormulaParams method) (genome_spy.IdentifierParams method) (genome_spy.IndexDendrogramParams method) (genome_spy.LinearizeGenomicCoordinateParams method) (genome_spy.LookupParams method) (genome_spy.MeasureTextParams method) (genome_spy.PileupParams method) (genome_spy.ProjectParams method) (genome_spy.RegexExtractParams method) (genome_spy.SequenceParams method) (genome_spy.SiblingOrderedDendrogramParams method) (genome_spy.StackParams method) (genome_spy.TransformParams method) (genome_spy.TruncateTextParams method) (genome_spy.WindowParams method) asChrom() (genome_spy.CoverageParams method) (genome_spy.TransformParams method) asEnd() (genome_spy.CoverageParams method) (genome_spy.TransformParams method) asin() (genome_spy.expr class method) asKey() (genome_spy.RegexFoldParams method) (genome_spy.TransformParams method) asMidpoint() (genome_spy.FilterScoredLabelsParams method) (genome_spy.TransformParams method) assembly() (genome_spy.CoreRootSpec method) (genome_spy.Scale method) (genome_spy.ScaleConfig method) asStart() (genome_spy.CoverageParams method) (genome_spy.TransformParams method) asValue() (genome_spy.RegexFoldParams method) (genome_spy.TransformParams method) atan() (genome_spy.expr class method) atan2() (genome_spy.expr class method) atob() (genome_spy.expr class method) attach() (genome_spy.MultiUrlSourceRef method) (genome_spy.SingleUrlSourceRef method) (genome_spy.UrlSourceRef method) (genome_spy.UrlTemplate method) autocomplete() (genome_spy.Binding method) (genome_spy.BindInput method) available_datasets() (in module genome_spy.datasets) axes() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) (in module genome_spy) Axis (class in genome_spy) axis() (genome_spy.AxisTicksData method) (genome_spy.ChromPosDef method) (genome_spy.GenomeSpyConfig method) (genome_spy.LazyDataParams method) (genome_spy.Position2Def method) (genome_spy.PositionDatumDef method) (genome_spy.PositionDef method) (genome_spy.PositionExprDef method) (genome_spy.PositionFieldDef method) (genome_spy.SecondaryChromPosDef method) (genome_spy.X method) (genome_spy.X2 method) (genome_spy.Y method) (genome_spy.Y2 method) axisBottom() (genome_spy.GenomeSpyConfig method) AxisConfig (class in genome_spy) AxisGenomeData (class in genome_spy) axisIndex() (genome_spy.GenomeSpyConfig method) AxisLabelLayoutParams (class in genome_spy) axisLeft() (genome_spy.GenomeSpyConfig method) axisLocus() (genome_spy.GenomeSpyConfig method) axisNominal() (genome_spy.GenomeSpyConfig method) axisOrdinal() (genome_spy.GenomeSpyConfig method) AxisOrient (class in genome_spy) AxisPlacement (class in genome_spy) axisQuantitative() (genome_spy.GenomeSpyConfig method) axisRight() (genome_spy.GenomeSpyConfig method) AxisTicksData (class in genome_spy) axisTop() (genome_spy.GenomeSpyConfig method) axisX() (genome_spy.GenomeSpyConfig method) axisY() (genome_spy.GenomeSpyConfig method) B background() (genome_spy.CoreRootSpec method) backgroundFill() (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) backgroundFillOpacity() (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) backgroundStroke() (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) backgroundStrokeOpacity() (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) backgroundStrokeWidth() (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) bam() (genome_spy.data.LazyNamespace method) BamData (class in genome_spy) band() (genome_spy.Angle method) (genome_spy.ArrowRelativeSize method) (genome_spy.ArrowSize method) (genome_spy.ChromPosDef method) (genome_spy.Color method) (genome_spy.ColorDef method) (genome_spy.ConditionalMarkPropExprDefType method) (genome_spy.ConditionalMarkPropExprDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropExprDefType method) (genome_spy.ConditionalParameterMarkPropExprDefTypeForShape method) (genome_spy.ConditionalParameterScaleDatumDef method) (genome_spy.ConditionalScaleDatumDef method) (genome_spy.ConditionalTestMarkPropExprDefType method) (genome_spy.ConditionalTestMarkPropExprDefTypeForShape method) (genome_spy.ConditionalTestScaleDatumDef method) (genome_spy.Direction method) (genome_spy.DirectionDef method) (genome_spy.Dx method) (genome_spy.Dy method) (genome_spy.ExprDef method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefNumber method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefStringNull method) (genome_spy.Fill method) (genome_spy.FillOpacity method) (genome_spy.MarkPropDefNumber method) (genome_spy.MarkPropDefStringNull method) (genome_spy.MarkPropDefStringNullTypeForShape method) (genome_spy.MarkPropExprDef method) (genome_spy.MarkPropExprDefType method) (genome_spy.MarkPropExprDefTypeForShape method) (genome_spy.NumericMarkPropDef method) (genome_spy.OffsetDef method) (genome_spy.Opacity method) (genome_spy.Position2Def method) (genome_spy.PositionDatumDef method) (genome_spy.PositionDef method) (genome_spy.PositionExprDef method) (genome_spy.PositionFieldDef method) (genome_spy.SecondaryChromPosDef method) (genome_spy.SecondaryOffsetDef method) (genome_spy.Shape method) (genome_spy.ShapeDef method) (genome_spy.Size method) (genome_spy.StringDatumDef method) (genome_spy.Stroke method) (genome_spy.StrokeOpacity method) (genome_spy.StrokeWidth method) (genome_spy.Text method) (genome_spy.TextDef method) (genome_spy.Tooltip method) (genome_spy.TooltipDef method) (genome_spy.X method) (genome_spy.X2 method) (genome_spy.X2Offset method) (genome_spy.XOffset method) (genome_spy.Y method) (genome_spy.Y2 method) (genome_spy.Y2Offset method) (genome_spy.YOffset method) bandstep() (genome_spy.expr class method) bandwidth() (genome_spy.expr class method) base() (genome_spy.Scale method) (genome_spy.ScaleConfig method) baseField() (genome_spy.StackParams method) (genome_spy.TransformParams method) Baseline (class in genome_spy) baseline() (genome_spy.FacetHeader method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.Title method) (genome_spy.TitleConfig method) baseUrl() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) BedDataFormat (class in genome_spy) BedpeDataFormat (class in genome_spy) bigbed() (genome_spy.data.LazyNamespace method) BigBedData (class in genome_spy) bigwig() (genome_spy.data.LazyNamespace method) BigWigData (class in genome_spy) bind() (genome_spy.CategorySelectionParameterColor method) (genome_spy.CategorySelectionParameterFill method) (genome_spy.CategorySelectionParameterShape method) (genome_spy.CategorySelectionParameterStroke method) (genome_spy.CategorySelectionParameterX method) (genome_spy.CategorySelectionParameterY method) (genome_spy.GradientIntervalSelectionParameterColor method) (genome_spy.GradientIntervalSelectionParameterFill method) (genome_spy.GradientIntervalSelectionParameterStroke method) (genome_spy.IntervalSelectionParameter method) (genome_spy.PlainValueParameter method) (genome_spy.SelectionParameter method) (genome_spy.TransitionedValueParameter method) (genome_spy.ValueParameter method) (genome_spy.VariableParameter method) BindCheckbox (class in genome_spy) Binding (class in genome_spy) binding() (in module genome_spy) binding_checkbox() (in module genome_spy) binding_radio() (in module genome_spy) binding_range() (in module genome_spy) binding_select() (in module genome_spy) BindInput (class in genome_spy) BindRadioSelect (class in genome_spy) BindRange (class in genome_spy) bins() (genome_spy.Scale method) (genome_spy.ScaleConfig method) bottom() (genome_spy.LegendLayout method) (genome_spy.OverhangConfig method) (genome_spy.PaddingConfig method) (genome_spy.Paddings method) (genome_spy.SurroundSides method) BranchParams (class in genome_spy) BrushConfig (class in genome_spy) btoa() (genome_spy.expr class method) buildIndex() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkConfig method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.TickConfig method) (genome_spy.TickProps method) (genome_spy.X method) BuiltInThemeName (class in genome_spy) C capitalize() (genome_spy.Expression method) cardinality() (genome_spy.StackParams method) (genome_spy.TransformParams method) casefold() (genome_spy.Expression method) CategorySelectionChannel (class in genome_spy) CategorySelectionParameterColor (class in genome_spy) CategorySelectionParameterFill (class in genome_spy) CategorySelectionParameterShape (class in genome_spy) CategorySelectionParameterStroke (class in genome_spy) CategorySelectionParameterX (class in genome_spy) CategorySelectionParameterY (class in genome_spy) ceil() (genome_spy.expr class method) center() (genome_spy.expr class method) (genome_spy.Expression method) channel() (genome_spy.ArrowRelativeSize method) (genome_spy.ArrowSize method) (genome_spy.AxisGenomeData method) (genome_spy.AxisLabelLayoutParams method) (genome_spy.AxisTicksData method) (genome_spy.BamData method) (genome_spy.BigBedData method) (genome_spy.BigWigData method) (genome_spy.CoordinateLookupParams method) (genome_spy.DynamicOpacity method) (genome_spy.FadedMultiscaleStops method) (genome_spy.FigWigData method) (genome_spy.FilterScoredLabelsParams method) (genome_spy.Gff3Data method) (genome_spy.IndexedFastaData method) (genome_spy.LazyDataParams method) (genome_spy.LinearizeGenomicCoordinateParams method) (genome_spy.MultiscaleStops method) (genome_spy.MultiscaleStopsDef method) (genome_spy.TabixTsvData method) (genome_spy.TransformParams method) (genome_spy.TransitionedMultiscaleStops method) (genome_spy.VcfData method) (genome_spy.ViewOpacityDef method) channels() (genome_spy.LazyDataParams method) (genome_spy.ScaleGroupsData method) ChannelWithScale (class in genome_spy) Chart (class in genome_spy) chrom() (genome_spy.ChromosomalLocus method) (genome_spy.ChromPosDef method) (genome_spy.CoverageParams method) (genome_spy.LinearizeGenomicCoordinateParams method) (genome_spy.Position2Def method) (genome_spy.PositionDef method) (genome_spy.RulerChannelValue method) (genome_spy.SecondaryChromPosDef method) (genome_spy.TransformParams method) (genome_spy.X method) (genome_spy.X2 method) (genome_spy.Y method) (genome_spy.Y2 method) chromGrid() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) chromGridCap() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) chromGridColor() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) chromGridDash() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) chromGridDashOffset() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) chromGridFillEven() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) chromGridFillOdd() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) chromGridOpacity() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) chromGridWidth() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) chromLabelAlign() (genome_spy.AxisConfig method) (genome_spy.AxisLabelLayoutParams method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) (genome_spy.TransformParams method) chromLabelColor() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) chromLabelFont() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) chromLabelFontSize() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) chromLabelFontStyle() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) chromLabelFontWeight() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) chromLabelPadding() (genome_spy.AxisConfig method) (genome_spy.AxisLabelLayoutParams method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) (genome_spy.TransformParams method) chromLabels() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) chromLabelSpacing() (genome_spy.AxisLabelLayoutParams method) (genome_spy.TransformParams method) chromLabelWidth() (genome_spy.AxisLabelLayoutParams method) (genome_spy.TransformParams method) ChromosomalLocus (class in genome_spy) ChromPosDef (class in genome_spy) chromTickColor() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) chromTickDash() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) chromTickDashOffset() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) chromTicks() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) chromTickSize() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) chromTickWidth() (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) cigar() (genome_spy.AlignmentMismatchesParams method) (genome_spy.FlattenCigarParams method) (genome_spy.TransformParams method) clamp() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.BrushConfig method) (genome_spy.expr class method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkConfig method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.Scale method) (genome_spy.ScaleConfig method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.TickConfig method) (genome_spy.TickProps method) clampApex() (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) clear() (genome_spy.RulerConfig method) clip() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.BrushConfig method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkConfig method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.TickConfig method) (genome_spy.TickProps method) clustermap() (in module genome_spy.integrations.scanpy.pl) CollectParams (class in genome_spy) Color (class in genome_spy) color() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.BrushConfig method) (genome_spy.Encoding method) (genome_spy.FacetHeader method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkConfig method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.TickConfig method) (genome_spy.TickProps method) (genome_spy.Title method) (genome_spy.TitleConfig method) ColorDef (class in genome_spy) ColorSchemeConfig (class in genome_spy) column() (genome_spy.FacetMapping method) (genome_spy.FacetSpacing method) columnPadding() (genome_spy.LegendConfig method) (genome_spy.PackLegendLabelsParams method) (genome_spy.StyleConfig method) (genome_spy.TransformParams method) columnRegex() (genome_spy.RegexFoldParams method) (genome_spy.TransformParams method) columns() (genome_spy.BedpeDataFormat method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.CsvDataFormat method) (genome_spy.DataFormat method) (genome_spy.DsvDataFormat method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.LazyDataParams method) (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.PackLegendLabelsParams method) (genome_spy.StyleConfig method) (genome_spy.TabixTsvData method) (genome_spy.TransformParams method) (genome_spy.ViewSpec method) compare() (in module genome_spy) CompareParams (class in genome_spy) ComplexDomain (class in genome_spy) concat() (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.ViewSpec method) (in module genome_spy) ConcatChart (class in genome_spy) ConcatSpec (class in genome_spy) condition() (genome_spy.Angle method) (genome_spy.Color method) (genome_spy.ColorDef method) (genome_spy.Dx method) (genome_spy.Dy method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeForShapeStringNull method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeNumber method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeStringNull method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefNumber method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefStringNull method) (genome_spy.Fill method) (genome_spy.FillOpacity method) (genome_spy.MarkPropDefNumber method) (genome_spy.MarkPropDefStringNull method) (genome_spy.MarkPropDefStringNullTypeForShape method) (genome_spy.NumericMarkPropDef method) (genome_spy.OffsetDef method) (genome_spy.Opacity method) (genome_spy.Order method) (genome_spy.OrderDef method) (genome_spy.Shape method) (genome_spy.ShapeDef method) (genome_spy.Size method) (genome_spy.Stroke method) (genome_spy.StrokeOpacity method) (genome_spy.StrokeWidth method) (genome_spy.ValueDefWithConditionNumberType method) (genome_spy.ValueDefWithConditionStringNullType method) (genome_spy.ValueDefWithConditionStringNullTypeForShape method) (genome_spy.XOffset method) (genome_spy.YOffset method) (in module genome_spy) ConditionalMarkPropExprDefType (class in genome_spy) ConditionalMarkPropExprDefTypeForShape (class in genome_spy) ConditionalMarkPropFieldDefType (class in genome_spy) ConditionalMarkPropFieldDefTypeForShape (class in genome_spy) ConditionalParameterMarkPropExprDefType (class in genome_spy) ConditionalParameterMarkPropExprDefTypeForShape (class in genome_spy) ConditionalParameterMarkPropFieldDefType (class in genome_spy) ConditionalParameterMarkPropFieldDefTypeForShape (class in genome_spy) ConditionalParameterScaleDatumDef (class in genome_spy) ConditionalParameterValueDefNumberExprRef (class in genome_spy) ConditionalParameterValueDefStringNullExprRef (class in genome_spy) ConditionalScaleDatumDef (class in genome_spy) ConditionalTestMarkPropExprDefType (class in genome_spy) ConditionalTestMarkPropExprDefTypeForShape (class in genome_spy) ConditionalTestMarkPropFieldDefType (class in genome_spy) ConditionalTestMarkPropFieldDefTypeForShape (class in genome_spy) ConditionalTestScaleDatumDef (class in genome_spy) ConditionalTestValueDefNumberExprRef (class in genome_spy) ConditionalTestValueDefStringNullExprRef (class in genome_spy) ConditionalValueDefNumberExprRef (class in genome_spy) ConditionalValueDefStringNullExprRef (class in genome_spy) config() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.ImportedView method) (genome_spy.ImportSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) (in module genome_spy) configure() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_arrow() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_axis() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_axis_bottom() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_axis_index() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_axis_left() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_axis_locus() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_axis_nominal() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_axis_ordinal() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_axis_quantitative() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_axis_right() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_axis_top() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_axis_x() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_axis_y() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_header() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_header_column() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_header_row() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_legend() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_legend_track() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_link() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_mark() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_point() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_range() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_rect() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_rule() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_scale() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_style() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_text() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_tick() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_title() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) configure_view() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) consolidate_datasets (genome_spy.data_transformers.DataTransformerSettings property) constant() (genome_spy.Scale method) (genome_spy.ScaleConfig method) Contig (class in genome_spy) contigs() (genome_spy.GenomeConfig method) (genome_spy.GenomeDefinition method) (genome_spy.InlineGenomeConfig method) (genome_spy.InlineGenomeDefinition method) (genome_spy.InlineLocusAssembly method) (genome_spy.NamedGenomeConfig method) continuousHeight() (genome_spy.ViewConfig method) continuousWidth() (genome_spy.ViewConfig method) CoordinateLookupInput (class in genome_spy) CoordinateLookupParams (class in genome_spy) copy() (genome_spy.AggregateOp method) (genome_spy.AggregateParams method) (genome_spy.Align method) (genome_spy.AlignmentMismatchesParams method) (genome_spy.ArrowConfig method) (genome_spy.ArrowDirection method) (genome_spy.ArrowProps method) (genome_spy.ArrowRelativeSize method) (genome_spy.ArrowSize method) (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.AxisGenomeData method) (genome_spy.AxisLabelLayoutParams method) (genome_spy.AxisOrient method) (genome_spy.AxisPlacement method) (genome_spy.AxisTicksData method) (genome_spy.BamData method) (genome_spy.Baseline method) (genome_spy.BedDataFormat method) (genome_spy.BedpeDataFormat method) (genome_spy.BigBedData method) (genome_spy.BigWigData method) (genome_spy.BindCheckbox method) (genome_spy.Binding method) (genome_spy.BindInput method) (genome_spy.BindRadioSelect method) (genome_spy.BindRange method) (genome_spy.BranchParams method) (genome_spy.BrushConfig method) (genome_spy.BuiltInThemeName method) (genome_spy.CategorySelectionChannel method) (genome_spy.CategorySelectionParameterColor method) (genome_spy.CategorySelectionParameterFill method) (genome_spy.CategorySelectionParameterShape method) (genome_spy.CategorySelectionParameterStroke method) (genome_spy.CategorySelectionParameterX method) (genome_spy.CategorySelectionParameterY method) (genome_spy.ChannelWithScale method) (genome_spy.Chart method) (genome_spy.ChromosomalLocus method) (genome_spy.ChromPosDef method) (genome_spy.CollectParams method) (genome_spy.ColorDef method) (genome_spy.ColorSchemeConfig method) (genome_spy.CompareParams method) (genome_spy.ComplexDomain method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.ConditionalMarkPropExprDefType method) (genome_spy.ConditionalMarkPropExprDefTypeForShape method) (genome_spy.ConditionalMarkPropFieldDefType method) (genome_spy.ConditionalMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropExprDefType method) (genome_spy.ConditionalParameterMarkPropExprDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropFieldDefType method) (genome_spy.ConditionalParameterMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterScaleDatumDef method) (genome_spy.ConditionalParameterValueDefNumberExprRef method) (genome_spy.ConditionalParameterValueDefStringNullExprRef method) (genome_spy.ConditionalScaleDatumDef method) (genome_spy.ConditionalTestMarkPropExprDefType method) (genome_spy.ConditionalTestMarkPropExprDefTypeForShape method) (genome_spy.ConditionalTestMarkPropFieldDefType method) (genome_spy.ConditionalTestMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalTestScaleDatumDef method) (genome_spy.ConditionalTestValueDefNumberExprRef method) (genome_spy.ConditionalTestValueDefStringNullExprRef method) (genome_spy.ConditionalValueDefNumberExprRef method) (genome_spy.ConditionalValueDefStringNullExprRef method) (genome_spy.Contig method) (genome_spy.CoordinateLookupInput method) (genome_spy.CoordinateLookupParams method) (genome_spy.CoreRootSpec method) (genome_spy.CoverageParams method) (genome_spy.CrossData method) (genome_spy.CrossInput method) (genome_spy.CrossParams method) (genome_spy.CsvDataFormat method) (genome_spy.Data method) (genome_spy.DataFormat method) (genome_spy.DataSource method) (genome_spy.DebouncedExprParameter method) (genome_spy.DendrogramParams method) (genome_spy.DirectionDef method) (genome_spy.Displace1DParams method) (genome_spy.Displace2DParams method) (genome_spy.DomainValue method) (genome_spy.DomainValueArray method) (genome_spy.DomEventType method) (genome_spy.DsvDataFormat method) (genome_spy.DynamicCallbackData method) (genome_spy.DynamicOpacity method) (genome_spy.Encoding method) (genome_spy.EventConfig method) (genome_spy.ExplicitlyOrderedDendrogramParams method) (genome_spy.expr method) (genome_spy.ExprDef method) (genome_spy.Expression method) (genome_spy.ExprFilterParams method) (genome_spy.ExprParameter method) (genome_spy.ExprRef method) (genome_spy.FacetChart method) (genome_spy.FacetFieldDef method) (genome_spy.FacetHeader method) (genome_spy.FacetMapping method) (genome_spy.FacetSpacing method) (genome_spy.FacetSpec method) (genome_spy.FadedMultiscaleStops method) (genome_spy.Field method) (genome_spy.FieldDefWithoutScale method) (genome_spy.FieldName method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeForShapeStringNull method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeNumber method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeStringNull method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefNumber method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefStringNull method) (genome_spy.FigWigData method) (genome_spy.FilterParams method) (genome_spy.FilterScoredLabelsParams method) (genome_spy.FlattenCigarParams method) (genome_spy.FlattenCompressedExonsParams method) (genome_spy.FlattenDelimitedParams method) (genome_spy.FlattenParams method) (genome_spy.FlattenSequenceParams method) (genome_spy.FontStyle method) (genome_spy.FontWeight method) (genome_spy.FormulaParams method) (genome_spy.Generator method) (genome_spy.GenomeAxis method) (genome_spy.GenomeConfig method) (genome_spy.GenomeConfigBase method) (genome_spy.GenomeDefinition method) (genome_spy.GenomeSpyConfig method) (genome_spy.GenomeSpySchema method) (genome_spy.Gff3Data method) (genome_spy.GradientIntervalSelectionParameterColor method) (genome_spy.GradientIntervalSelectionParameterFill method) (genome_spy.GradientIntervalSelectionParameterStroke method) (genome_spy.HandledTooltip method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.IdentifierParams method) (genome_spy.ImportedView method) (genome_spy.ImportSpec method) (genome_spy.IndexDendrogramParams method) (genome_spy.IndexedFastaData method) (genome_spy.IndexUrlSourceRef method) (genome_spy.IndexUrlTemplate method) (genome_spy.InlineData method) (genome_spy.InlineDataset method) (genome_spy.InlineGenomeConfig method) (genome_spy.InlineGenomeDefinition method) (genome_spy.InlineLocusAssembly method) (genome_spy.InteractionEventType method) (genome_spy.IntervalSelectionParameter method) (genome_spy.JsonDataFormat method) (genome_spy.KeyDef method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.LazyData method) (genome_spy.LazyDataParams method) (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.LegendDirection method) (genome_spy.LegendLayout method) (genome_spy.LegendOrient method) (genome_spy.LegendRegionAnchor method) (genome_spy.LegendRegionLayout method) (genome_spy.LegendResolutionBehavior method) (genome_spy.LegendTitleOrient method) (genome_spy.LerpTransition method) (genome_spy.LinearizeGenomicCoordinateParams method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.LookupParams method) (genome_spy.LookupSelfInput method) (genome_spy.MarkConfig method) (genome_spy.MarkPropDefNumber method) (genome_spy.MarkPropDefStringNull method) (genome_spy.MarkPropDefStringNullTypeForShape method) (genome_spy.MarkPropExprDef method) (genome_spy.MarkPropExprDefType method) (genome_spy.MarkPropExprDefTypeForShape method) (genome_spy.MarkProps method) (genome_spy.MarkType method) (genome_spy.MeasureTextParams method) (genome_spy.MergeFacetsParams method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.MultiscaleStops method) (genome_spy.MultiscaleStopsDef method) (genome_spy.MultiUrlSourceRef method) (genome_spy.NamedData method) (genome_spy.NamedGenomeConfig method) (genome_spy.NamedSelectionPredicateRef method) (genome_spy.NumericDomain method) (genome_spy.NumericMarkPropDef method) (genome_spy.NumericStopDef method) (genome_spy.NumericValueDef method) (genome_spy.OffsetChannel method) (genome_spy.OffsetDef method) (genome_spy.OrderCondition method) (genome_spy.OrderDef method) (genome_spy.OtherDataFormat method) (genome_spy.OverhangConfig method) (genome_spy.PackLegendLabelsParams method) (genome_spy.PaddingConfig method) (genome_spy.Paddings method) (genome_spy.Parameter method) (genome_spy.ParameterPredicate method) (genome_spy.ParamTransition method) (genome_spy.Parse method) (genome_spy.ParseValue method) (genome_spy.PileupParams method) (genome_spy.PlainExprParameter method) (genome_spy.PlainValueParameter method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.Position2Def method) (genome_spy.PositionalChannel method) (genome_spy.PositionalIntervalSelectionParameter method) (genome_spy.PositionDatumDef method) (genome_spy.PositionDef method) (genome_spy.PositionExprDef method) (genome_spy.PositionFieldDef method) (genome_spy.PositionValueDef method) (genome_spy.PrimaryPositionalChannel method) (genome_spy.ProjectParams method) (genome_spy.RangeConfig method) (genome_spy.RecordSelectionParameter method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.RegexExtractParams method) (genome_spy.RegexFoldParams method) (genome_spy.ResolutionBehavior method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.Root method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.RulerChannelValue method) (genome_spy.RulerClear method) (genome_spy.RulerConfig method) (genome_spy.RulerDisplay method) (genome_spy.RulerEventConfig method) (genome_spy.RulerEventType method) (genome_spy.RulerExtent method) (genome_spy.RulerInitMapping method) (genome_spy.RulerMarkConfig method) (genome_spy.RulerParameter method) (genome_spy.RulerSnap method) (genome_spy.RulerSource method) (genome_spy.SampleParams method) (genome_spy.Scalar method) (genome_spy.ScalarDomain method) (genome_spy.Scale method) (genome_spy.ScaleConfig method) (genome_spy.ScaleGroupsData method) (genome_spy.ScaleInterpolate method) (genome_spy.ScaleInterpolateParams method) (genome_spy.ScaleType method) (genome_spy.SchemeParams method) (genome_spy.SearchDef method) (genome_spy.SecondaryChromPosDef method) (genome_spy.SecondaryOffsetChannel method) (genome_spy.SecondaryOffsetDef method) (genome_spy.SecondaryPositionalChannel method) (genome_spy.SelectionDomainRef method) (genome_spy.SelectionExtent method) (genome_spy.SelectionFilterParams method) (genome_spy.SelectionInitIntervalMapping method) (genome_spy.SelectionParameter method) (genome_spy.SelectionPredicateDefinition method) (genome_spy.SelectionPredicateOperand method) (genome_spy.SelectionUnionTest method) (genome_spy.SeparatorProps method) (genome_spy.SequenceGenerator method) (genome_spy.SequenceParams method) (genome_spy.SetIntersectionParams method) (genome_spy.ShapeDef method) (genome_spy.SiblingOrderedDendrogramParams method) (genome_spy.SingleUrlSourceRef method) (genome_spy.SizeDef method) (genome_spy.SortOrder method) (genome_spy.StackParams method) (genome_spy.Step method) (genome_spy.StringDatumDef method) (genome_spy.StringFieldDef method) (genome_spy.StrokeAlign method) (genome_spy.StyleConfig method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSides method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.TabixTsvData method) (genome_spy.TemplateImport method) (genome_spy.TextConfig method) (genome_spy.TextDef method) (genome_spy.TextProps method) (genome_spy.TickConfig method) (genome_spy.TickProps method) (genome_spy.Title method) (genome_spy.TitleAnchor method) (genome_spy.TitleConfig method) (genome_spy.TitleFrame method) (genome_spy.TitleOrient method) (genome_spy.TooltipDef method) (genome_spy.TransformOutput method) (genome_spy.TransformParams method) (genome_spy.TransitionedExprParameter method) (genome_spy.TransitionedMultiscaleStops method) (genome_spy.TransitionedValueParameter method) (genome_spy.TruncateTextParams method) (genome_spy.Type method) (genome_spy.TypeForShape method) (genome_spy.UnitSpec method) (genome_spy.UrlData method) (genome_spy.UrlGenomeConfig method) (genome_spy.UrlGenomeDefinition method) (genome_spy.UrlImport method) (genome_spy.UrlList method) (genome_spy.UrlSourceRef method) (genome_spy.UrlTemplate method) (genome_spy.ValueDefArrowDirection method) (genome_spy.ValueDefNumber method) (genome_spy.ValueDefString method) (genome_spy.ValueDefWithConditionNumberType method) (genome_spy.ValueDefWithConditionStringNullType method) (genome_spy.ValueDefWithConditionStringNullTypeForShape method) (genome_spy.ValueParameter method) (genome_spy.ValuesParams method) (genome_spy.VariableParameter method) (genome_spy.VcfData method) (genome_spy.VcfDataFormat method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewBackground method) (genome_spy.ViewConfig method) (genome_spy.ViewOpacityDef method) (genome_spy.ViewportDomainRef method) (genome_spy.ViewportSizeDef method) (genome_spy.ViewSpec method) (genome_spy.WigDataFormat method) (genome_spy.WindowOnlyOp method) (genome_spy.WindowOp method) (genome_spy.WindowParams method) (genome_spy.ZoomParams method) copyFields() (genome_spy.AlignmentMismatchesParams method) (genome_spy.FlattenCigarParams method) (genome_spy.TransformParams method) CoreRootSpec (class in genome_spy) cornerRadius() (genome_spy.BrushConfig method) (genome_spy.MarkProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.StyleConfig method) cornerRadiusBottomLeft() (genome_spy.BrushConfig method) (genome_spy.MarkProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.StyleConfig method) cornerRadiusBottomRight() (genome_spy.BrushConfig method) (genome_spy.MarkProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.StyleConfig method) cornerRadiusTopLeft() (genome_spy.BrushConfig method) (genome_spy.MarkProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.StyleConfig method) cornerRadiusTopRight() (genome_spy.BrushConfig method) (genome_spy.MarkProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.StyleConfig method) correlation_matrix() (in module genome_spy.integrations.scanpy.pl) cos() (genome_spy.expr class method) count() (genome_spy.ColorSchemeConfig method) (genome_spy.Expression method) (genome_spy.LazyDataParams method) (genome_spy.SchemeParams method) CoverageParams (class in genome_spy) CrossData (class in genome_spy) CrossInput (class in genome_spy) CrossParams (class in genome_spy) CsvDataFormat (class in genome_spy) cullByVisibleRange() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkConfig method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.TickConfig method) (genome_spy.TickProps method) cursor() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.BrushConfig method) (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkConfig method) (genome_spy.MarkProps method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.TickConfig method) (genome_spy.TickProps method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) D Data (class in genome_spy) data() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoordinateLookupInput method) (genome_spy.CoreRootSpec method) (genome_spy.CrossInput method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) data_format() (in module genome_spy) DataFormat (class in genome_spy) dataset_names (genome_spy.JupyterChart property) DatasetNotFoundError datasets() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) DataSource (class in genome_spy) DataTransformerSettings (class in genome_spy.data_transformers) dataType() (genome_spy.LazyDataParams method) datum (in module genome_spy) datum() (genome_spy.Angle method) (genome_spy.Color method) (genome_spy.ColorDef method) (genome_spy.ConditionalParameterScaleDatumDef method) (genome_spy.ConditionalScaleDatumDef method) (genome_spy.ConditionalTestScaleDatumDef method) (genome_spy.Direction method) (genome_spy.DirectionDef method) (genome_spy.Dx method) (genome_spy.Dy method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefNumber method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefStringNull method) (genome_spy.Fill method) (genome_spy.FillOpacity method) (genome_spy.MarkPropDefNumber method) (genome_spy.MarkPropDefStringNull method) (genome_spy.MarkPropDefStringNullTypeForShape method) (genome_spy.NumericMarkPropDef method) (genome_spy.OffsetDef method) (genome_spy.Opacity method) (genome_spy.Position2Def method) (genome_spy.PositionDatumDef method) (genome_spy.PositionDef method) (genome_spy.SecondaryOffsetDef method) (genome_spy.Shape method) (genome_spy.ShapeDef method) (genome_spy.Size method) (genome_spy.StringDatumDef method) (genome_spy.Stroke method) (genome_spy.StrokeOpacity method) (genome_spy.StrokeWidth method) (genome_spy.Text method) (genome_spy.TextDef method) (genome_spy.Tooltip method) (genome_spy.TooltipDef method) (genome_spy.X method) (genome_spy.X2 method) (genome_spy.X2Offset method) (genome_spy.XOffset method) (genome_spy.Y method) (genome_spy.Y2 method) (genome_spy.Y2Offset method) (genome_spy.YOffset method) debounce() (genome_spy.BamData method) (genome_spy.BigBedData method) (genome_spy.BigWigData method) (genome_spy.BindCheckbox method) (genome_spy.Binding method) (genome_spy.BindInput method) (genome_spy.BindRadioSelect method) (genome_spy.BindRange method) (genome_spy.DebouncedExprParameter method) (genome_spy.ExprFilterParams method) (genome_spy.ExprParameter method) (genome_spy.FigWigData method) (genome_spy.FilterParams method) (genome_spy.FormulaParams method) (genome_spy.Gff3Data method) (genome_spy.IndexedFastaData method) (genome_spy.LazyDataParams method) (genome_spy.SelectionFilterParams method) (genome_spy.TabixTsvData method) (genome_spy.TransformParams method) (genome_spy.VariableParameter method) (genome_spy.VcfData method) DebouncedExprParameter (class in genome_spy) debounceDomainChange() (genome_spy.BamData method) (genome_spy.BigBedData method) (genome_spy.BigWigData method) (genome_spy.FigWigData method) (genome_spy.Gff3Data method) (genome_spy.IndexedFastaData method) (genome_spy.LazyDataParams method) (genome_spy.TabixTsvData method) (genome_spy.VcfData method) debounceMode() (genome_spy.BamData method) (genome_spy.BigBedData method) (genome_spy.BigWigData method) (genome_spy.FigWigData method) (genome_spy.Gff3Data method) (genome_spy.IndexedFastaData method) (genome_spy.LazyDataParams method) (genome_spy.TabixTsvData method) (genome_spy.VcfData method) default() (genome_spy.CoordinateLookupParams method) (genome_spy.LookupParams method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.TransformParams method) delimiter() (genome_spy.DataFormat method) (genome_spy.DsvDataFormat method) dendrogram() (in module genome_spy.integrations.scanpy.pl) DendrogramParams (class in genome_spy) description() (genome_spy.AggregateParams method) (genome_spy.AlignmentMismatchesParams method) (genome_spy.Angle method) (genome_spy.AxisLabelLayoutParams method) (genome_spy.BindCheckbox method) (genome_spy.Binding method) (genome_spy.BindInput method) (genome_spy.BindRadioSelect method) (genome_spy.BindRange method) (genome_spy.BranchParams method) (genome_spy.CategorySelectionParameterColor method) (genome_spy.CategorySelectionParameterFill method) (genome_spy.CategorySelectionParameterShape method) (genome_spy.CategorySelectionParameterStroke method) (genome_spy.CategorySelectionParameterX method) (genome_spy.CategorySelectionParameterY method) (genome_spy.Chart method) (genome_spy.ChromPosDef method) (genome_spy.CollectParams method) (genome_spy.Color method) (genome_spy.ColorDef method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.ConditionalMarkPropExprDefType method) (genome_spy.ConditionalMarkPropExprDefTypeForShape method) (genome_spy.ConditionalMarkPropFieldDefType method) (genome_spy.ConditionalMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropExprDefType method) (genome_spy.ConditionalParameterMarkPropExprDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropFieldDefType method) (genome_spy.ConditionalParameterMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterScaleDatumDef method) (genome_spy.ConditionalParameterValueDefNumberExprRef method) (genome_spy.ConditionalParameterValueDefStringNullExprRef method) (genome_spy.ConditionalScaleDatumDef method) (genome_spy.ConditionalTestMarkPropExprDefType method) (genome_spy.ConditionalTestMarkPropExprDefTypeForShape method) (genome_spy.ConditionalTestMarkPropFieldDefType method) (genome_spy.ConditionalTestMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalTestScaleDatumDef method) (genome_spy.ConditionalTestValueDefNumberExprRef method) (genome_spy.ConditionalTestValueDefStringNullExprRef method) (genome_spy.ConditionalValueDefNumberExprRef method) (genome_spy.ConditionalValueDefStringNullExprRef method) (genome_spy.CoordinateLookupParams method) (genome_spy.CoreRootSpec method) (genome_spy.CoverageParams method) (genome_spy.CrossData method) (genome_spy.CrossParams method) (genome_spy.Data method) (genome_spy.DataSource method) (genome_spy.DebouncedExprParameter method) (genome_spy.DendrogramParams method) (genome_spy.Direction method) (genome_spy.DirectionDef method) (genome_spy.Displace1DParams method) (genome_spy.Displace2DParams method) (genome_spy.Dx method) (genome_spy.Dy method) (genome_spy.DynamicCallbackData method) (genome_spy.ExplicitlyOrderedDendrogramParams method) (genome_spy.ExprDef method) (genome_spy.ExprFilterParams method) (genome_spy.ExprParameter method) (genome_spy.FacetChart method) (genome_spy.FacetFieldDef method) (genome_spy.FacetIndex method) (genome_spy.FacetSpec method) (genome_spy.FieldDefWithoutScale method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeForShapeStringNull method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeNumber method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeStringNull method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefNumber method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefStringNull method) (genome_spy.Fill method) (genome_spy.FillOpacity method) (genome_spy.FilterParams method) (genome_spy.FilterScoredLabelsParams method) (genome_spy.FlattenCigarParams method) (genome_spy.FlattenCompressedExonsParams method) (genome_spy.FlattenDelimitedParams method) (genome_spy.FlattenParams method) (genome_spy.FlattenSequenceParams method) (genome_spy.FormulaParams method) (genome_spy.Generator method) (genome_spy.GradientIntervalSelectionParameterColor method) (genome_spy.GradientIntervalSelectionParameterFill method) (genome_spy.GradientIntervalSelectionParameterStroke method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.IdentifierParams method) (genome_spy.IndexDendrogramParams method) (genome_spy.InlineData method) (genome_spy.IntervalSelectionParameter method) (genome_spy.Key method) (genome_spy.KeyDef method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.LazyData method) (genome_spy.LinearizeGenomicCoordinateParams method) (genome_spy.LookupParams method) (genome_spy.MarkPropDefNumber method) (genome_spy.MarkPropDefStringNull method) (genome_spy.MarkPropDefStringNullTypeForShape method) (genome_spy.MarkPropExprDef method) (genome_spy.MarkPropExprDefType method) (genome_spy.MarkPropExprDefTypeForShape method) (genome_spy.MeasureTextParams method) (genome_spy.MergeFacetsParams method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.NamedData method) (genome_spy.NumericMarkPropDef method) (genome_spy.NumericValueDef method) (genome_spy.OffsetDef method) (genome_spy.Opacity method) (genome_spy.PackLegendLabelsParams method) (genome_spy.PileupParams method) (genome_spy.PlainExprParameter method) (genome_spy.PlainValueParameter method) (genome_spy.Position2Def method) (genome_spy.PositionalIntervalSelectionParameter method) (genome_spy.PositionDatumDef method) (genome_spy.PositionDef method) (genome_spy.PositionExprDef method) (genome_spy.PositionFieldDef method) (genome_spy.PositionValueDef method) (genome_spy.ProjectParams method) (genome_spy.RecordSelectionParameter method) (genome_spy.RegexExtractParams method) (genome_spy.RegexFoldParams method) (genome_spy.RulerParameter method) (genome_spy.Sample method) (genome_spy.SampleParams method) (genome_spy.Search method) (genome_spy.SearchDef method) (genome_spy.SecondaryChromPosDef method) (genome_spy.SecondaryOffsetDef method) (genome_spy.SelectionFilterParams method) (genome_spy.SelectionParameter method) (genome_spy.SemanticScore method) (genome_spy.SequenceGenerator method) (genome_spy.SetIntersectionParams method) (genome_spy.Shape method) (genome_spy.ShapeDef method) (genome_spy.SiblingOrderedDendrogramParams method) (genome_spy.Size method) (genome_spy.StackParams method) (genome_spy.StringDatumDef method) (genome_spy.StringFieldDef method) (genome_spy.Stroke method) (genome_spy.StrokeOpacity method) (genome_spy.StrokeWidth method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.Text method) (genome_spy.TextDef method) (genome_spy.Tooltip method) (genome_spy.TooltipDef method) (genome_spy.TransformParams method) (genome_spy.TransitionedExprParameter method) (genome_spy.TransitionedValueParameter method) (genome_spy.TruncateTextParams method) (genome_spy.UniqueId method) (genome_spy.UnitSpec method) (genome_spy.UrlData method) (genome_spy.ValueDefArrowDirection method) (genome_spy.ValueDefNumber method) (genome_spy.ValueDefString method) (genome_spy.ValueDefWithConditionNumberType method) (genome_spy.ValueDefWithConditionStringNullType method) (genome_spy.ValueDefWithConditionStringNullTypeForShape method) (genome_spy.ValueParameter method) (genome_spy.ValuesParams method) (genome_spy.VariableParameter method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) (genome_spy.WindowParams method) (genome_spy.X method) (genome_spy.X2 method) (genome_spy.X2Offset method) (genome_spy.XOffset method) (genome_spy.Y method) (genome_spy.Y2 method) (genome_spy.Y2Offset method) (genome_spy.YOffset method) diffmap() (in module genome_spy.integrations.scanpy.pl) Direction (class in genome_spy) direction() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.Encoding method) (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.LegendLayout method) (genome_spy.LegendRegionLayout method) (genome_spy.MarkProps method) (genome_spy.PackLegendLabelsParams method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.StyleConfig method) (genome_spy.TransformParams method) DirectionDef (class in genome_spy) disable() (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) disabled() (genome_spy.RulerConfig method) discreteHeight() (genome_spy.ViewConfig method) discreteWidth() (genome_spy.ViewConfig method) Displace1DParams (class in genome_spy) Displace2DParams (class in genome_spy) display() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.RulerConfig method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) diverging() (genome_spy.RangeConfig method) domain() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.expr class method) (genome_spy.FacetFieldDef method) (genome_spy.GenomeAxis method) (genome_spy.Scale method) (genome_spy.ScaleConfig method) (genome_spy.StyleConfig method) domainCap() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) domainColor() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) domainDash() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) domainDashOffset() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) domainInert() (genome_spy.Angle method) (genome_spy.Chart method) (genome_spy.ChromPosDef method) (genome_spy.Color method) (genome_spy.ColorDef method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.ConditionalMarkPropExprDefType method) (genome_spy.ConditionalMarkPropExprDefTypeForShape method) (genome_spy.ConditionalMarkPropFieldDefType method) (genome_spy.ConditionalMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropExprDefType method) (genome_spy.ConditionalParameterMarkPropExprDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropFieldDefType method) (genome_spy.ConditionalParameterMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterScaleDatumDef method) (genome_spy.ConditionalScaleDatumDef method) (genome_spy.ConditionalTestMarkPropExprDefType method) (genome_spy.ConditionalTestMarkPropExprDefTypeForShape method) (genome_spy.ConditionalTestMarkPropFieldDefType method) (genome_spy.ConditionalTestMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalTestScaleDatumDef method) (genome_spy.CoreRootSpec method) (genome_spy.Direction method) (genome_spy.DirectionDef method) (genome_spy.Dx method) (genome_spy.Dy method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeForShapeStringNull method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeNumber method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeStringNull method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefNumber method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefStringNull method) (genome_spy.Fill method) (genome_spy.FillOpacity method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MarkPropDefNumber method) (genome_spy.MarkPropDefStringNull method) (genome_spy.MarkPropDefStringNullTypeForShape method) (genome_spy.MarkPropExprDef method) (genome_spy.MarkPropExprDefType method) (genome_spy.MarkPropExprDefTypeForShape method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.NumericMarkPropDef method) (genome_spy.OffsetDef method) (genome_spy.Opacity method) (genome_spy.Position2Def method) (genome_spy.PositionDatumDef method) (genome_spy.PositionDef method) (genome_spy.PositionExprDef method) (genome_spy.PositionFieldDef method) (genome_spy.SecondaryChromPosDef method) (genome_spy.SecondaryOffsetDef method) (genome_spy.Shape method) (genome_spy.ShapeDef method) (genome_spy.Size method) (genome_spy.StringFieldDef method) (genome_spy.Stroke method) (genome_spy.StrokeOpacity method) (genome_spy.StrokeWidth method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.Text method) (genome_spy.TextDef method) (genome_spy.Tooltip method) (genome_spy.TooltipDef method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) (genome_spy.X method) (genome_spy.X2 method) (genome_spy.X2Offset method) (genome_spy.XOffset method) (genome_spy.Y method) (genome_spy.Y2 method) (genome_spy.Y2Offset method) (genome_spy.YOffset method) domainMax() (genome_spy.Scale method) (genome_spy.ScaleConfig method) domainMid() (genome_spy.Scale method) (genome_spy.ScaleConfig method) domainMin() (genome_spy.Scale method) (genome_spy.ScaleConfig method) domainParam() (genome_spy.DendrogramParams method) (genome_spy.ExplicitlyOrderedDendrogramParams method) (genome_spy.SiblingOrderedDendrogramParams method) (genome_spy.TransformParams method) domainTransition() (genome_spy.Scale method) (genome_spy.ScaleConfig method) DomainValue (class in genome_spy) DomainValueArray (class in genome_spy) domainWidth() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) DomEventType (class in genome_spy) DotPlot (class in genome_spy.integrations.scanpy.pl) dotplot() (in module genome_spy.integrations.scanpy.pl) dpt_groups_pseudotime() (in module genome_spy.integrations.scanpy.pl) dpt_timeseries() (in module genome_spy.integrations.scanpy.pl) draw_graph() (in module genome_spy.integrations.scanpy.pl) DsvDataFormat (class in genome_spy) Dx (class in genome_spy) dx() (genome_spy.Encoding method) (genome_spy.FacetHeader method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.Title method) (genome_spy.TitleConfig method) Dy (class in genome_spy) dy() (genome_spy.Encoding method) (genome_spy.FacetHeader method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.Title method) (genome_spy.TitleConfig method) dynamic_opacity() (in module genome_spy) DynamicCallbackData (class in genome_spy) dynamicCallbackSource() (genome_spy.Data method) (genome_spy.DataSource method) (genome_spy.DynamicCallbackData method) DynamicOpacity (class in genome_spy) E element() (genome_spy.SetIntersectionParams method) (genome_spy.TransformParams method) ellipsis() (genome_spy.TransformParams method) (genome_spy.TruncateTextParams method) embedding() (in module genome_spy.integrations.scanpy.pl) embedding_density() (in module genome_spy.integrations.scanpy.pl) EmbeddingSummary (class in genome_spy.integrations.scanpy.pl) empty() (genome_spy.ConditionalMarkPropExprDefType method) (genome_spy.ConditionalMarkPropExprDefTypeForShape method) (genome_spy.ConditionalMarkPropFieldDefType method) (genome_spy.ConditionalMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropExprDefType method) (genome_spy.ConditionalParameterMarkPropExprDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropFieldDefType method) (genome_spy.ConditionalParameterMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterScaleDatumDef method) (genome_spy.ConditionalParameterValueDefNumberExprRef method) (genome_spy.ConditionalParameterValueDefStringNullExprRef method) (genome_spy.ConditionalScaleDatumDef method) (genome_spy.ConditionalValueDefNumberExprRef method) (genome_spy.ConditionalValueDefStringNullExprRef method) (genome_spy.FilterParams method) (genome_spy.OrderCondition method) (genome_spy.ParameterPredicate method) (genome_spy.SelectionFilterParams method) (genome_spy.SelectionPredicateDefinition method) (genome_spy.SelectionPredicateOperand method) (genome_spy.SelectionUnionTest method) (genome_spy.TransformParams method) enable() (genome_spy.data_transformers.DataTransformerSettings method) encode() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.Expression method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) Encoding (class in genome_spy) encoding() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SelectionDomainRef method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) encodings() (genome_spy.RulerConfig method) end() (genome_spy.CoverageParams method) (genome_spy.PileupParams method) (genome_spy.TransformParams method) endswith() (genome_spy.Expression method) epsilon() (genome_spy.LerpTransition method) (genome_spy.ParamTransition method) EventConfig (class in genome_spy) exons() (genome_spy.FlattenCompressedExonsParams method) (genome_spy.TransformParams method) exp() (genome_spy.expr class method) expandtabs() (genome_spy.Expression method) ExplicitlyOrderedDendrogramParams (class in genome_spy) exponent() (genome_spy.Scale method) (genome_spy.ScaleConfig method) expr (class in genome_spy) expr() (genome_spy.Angle method) (genome_spy.ArrowSize method) (genome_spy.Color method) (genome_spy.ColorDef method) (genome_spy.ConditionalMarkPropExprDefType method) (genome_spy.ConditionalMarkPropExprDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropExprDefType method) (genome_spy.ConditionalParameterMarkPropExprDefTypeForShape method) (genome_spy.ConditionalTestMarkPropExprDefType method) (genome_spy.ConditionalTestMarkPropExprDefTypeForShape method) (genome_spy.DebouncedExprParameter method) (genome_spy.DomainValue method) (genome_spy.Dx method) (genome_spy.Dy method) (genome_spy.expr method) (genome_spy.ExprDef method) (genome_spy.ExprFilterParams method) (genome_spy.ExprParameter method) (genome_spy.ExprRef method) (genome_spy.Fill method) (genome_spy.FillOpacity method) (genome_spy.FilterParams method) (genome_spy.FormulaParams method) (genome_spy.IndexUrlSourceRef method) (genome_spy.MarkPropDefNumber method) (genome_spy.MarkPropDefStringNull method) (genome_spy.MarkPropDefStringNullTypeForShape method) (genome_spy.MarkPropExprDef method) (genome_spy.MarkPropExprDefType method) (genome_spy.MarkPropExprDefTypeForShape method) (genome_spy.MultiUrlSourceRef method) (genome_spy.NumericMarkPropDef method) (genome_spy.NumericStopDef method) (genome_spy.OffsetDef method) (genome_spy.Opacity method) (genome_spy.Parameter method) (genome_spy.PlainExprParameter method) (genome_spy.Position2Def method) (genome_spy.PositionDef method) (genome_spy.PositionExprDef method) (genome_spy.SecondaryOffsetDef method) (genome_spy.Shape method) (genome_spy.ShapeDef method) (genome_spy.SingleUrlSourceRef method) (genome_spy.Size method) (genome_spy.Stroke method) (genome_spy.StrokeOpacity method) (genome_spy.StrokeWidth method) (genome_spy.Text method) (genome_spy.TextDef method) (genome_spy.Tooltip method) (genome_spy.TooltipDef method) (genome_spy.TransformParams method) (genome_spy.TransitionedExprParameter method) (genome_spy.UrlSourceRef method) (genome_spy.VariableParameter method) (genome_spy.ViewOpacityDef method) (genome_spy.ViewportSizeDef method) (genome_spy.X method) (genome_spy.X2 method) (genome_spy.X2Offset method) (genome_spy.XOffset method) (genome_spy.Y method) (genome_spy.Y2 method) (genome_spy.Y2Offset method) (genome_spy.YOffset method) ExprDef (class in genome_spy) Expression (class in genome_spy) ExprFilterParams (class in genome_spy) ExprParameter (class in genome_spy) ExprRef (class in genome_spy) extent() (genome_spy.ColorSchemeConfig method) (genome_spy.Displace1DParams method) (genome_spy.RulerConfig method) (genome_spy.SchemeParams method) (genome_spy.TransformParams method) (genome_spy.ZoomParams method) extraValues() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) F facet() (genome_spy.CoreRootSpec method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.ViewSpec method) (in module genome_spy) FacetChart (class in genome_spy) FacetFieldDef (class in genome_spy) FacetHeader (class in genome_spy) FacetIndex (class in genome_spy) facetIndex() (genome_spy.Encoding method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) FacetMapping (class in genome_spy) FacetSpacing (class in genome_spy) FacetSpec (class in genome_spy) fade() (genome_spy.FadedMultiscaleStops method) (genome_spy.MultiscaleStops method) (genome_spy.MultiscaleStopsDef method) FadedMultiscaleStops (class in genome_spy) Field (class in genome_spy) field() (genome_spy.Angle method) (genome_spy.Color method) (genome_spy.ColorDef method) (genome_spy.CompareParams method) (genome_spy.ConditionalMarkPropFieldDefType method) (genome_spy.ConditionalMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropFieldDefType method) (genome_spy.ConditionalParameterMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalTestMarkPropFieldDefType method) (genome_spy.ConditionalTestMarkPropFieldDefTypeForShape method) (genome_spy.Direction method) (genome_spy.DirectionDef method) (genome_spy.Dx method) (genome_spy.Dy method) (genome_spy.FacetFieldDef method) (genome_spy.FacetIndex method) (genome_spy.FieldDefWithoutScale method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeForShapeStringNull method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeNumber method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeStringNull method) (genome_spy.Fill method) (genome_spy.FillOpacity method) (genome_spy.FlattenDelimitedParams method) (genome_spy.FlattenSequenceParams method) (genome_spy.Key method) (genome_spy.KeyDef method) (genome_spy.MarkPropDefNumber method) (genome_spy.MarkPropDefStringNull method) (genome_spy.MarkPropDefStringNullTypeForShape method) (genome_spy.MeasureTextParams method) (genome_spy.MultiUrlSourceRef method) (genome_spy.NumericMarkPropDef method) (genome_spy.OffsetDef method) (genome_spy.Opacity method) (genome_spy.Position2Def method) (genome_spy.PositionDef method) (genome_spy.PositionFieldDef method) (genome_spy.RegexExtractParams method) (genome_spy.Sample method) (genome_spy.Search method) (genome_spy.SearchDef method) (genome_spy.SecondaryOffsetDef method) (genome_spy.SemanticScore method) (genome_spy.Shape method) (genome_spy.ShapeDef method) (genome_spy.SingleUrlSourceRef method) (genome_spy.Size method) (genome_spy.StackParams method) (genome_spy.StringFieldDef method) (genome_spy.Stroke method) (genome_spy.StrokeOpacity method) (genome_spy.StrokeWidth method) (genome_spy.Text method) (genome_spy.TextDef method) (genome_spy.Tooltip method) (genome_spy.TooltipDef method) (genome_spy.TransformParams method) (genome_spy.TruncateTextParams method) (genome_spy.UniqueId method) (genome_spy.UrlSourceRef method) (genome_spy.UrlTemplate method) (genome_spy.ValuesParams method) (genome_spy.X method) (genome_spy.X2 method) (genome_spy.X2Offset method) (genome_spy.XOffset method) (genome_spy.Y method) (genome_spy.Y2 method) (genome_spy.Y2Offset method) (genome_spy.YOffset method) FieldDefWithoutScale (class in genome_spy) FieldName (class in genome_spy) FieldOrDatumDefWithConditionMarkPropFieldDefTypeForShapeStringNull (class in genome_spy) FieldOrDatumDefWithConditionMarkPropFieldDefTypeNumber (class in genome_spy) FieldOrDatumDefWithConditionMarkPropFieldDefTypeStringNull (class in genome_spy) FieldOrDatumDefWithConditionScaleDatumDefNumber (class in genome_spy) FieldOrDatumDefWithConditionScaleDatumDefStringNull (class in genome_spy) fields() (genome_spy.AggregateParams method) (genome_spy.CoordinateLookupParams method) (genome_spy.FilterParams method) (genome_spy.FlattenParams method) (genome_spy.LookupParams method) (genome_spy.ProjectParams method) (genome_spy.SelectionFilterParams method) (genome_spy.TransformParams method) (genome_spy.WindowParams method) figwig() (genome_spy.data.LazyNamespace method) FigWigData (class in genome_spy) Fill (class in genome_spy) fill() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.BrushConfig method) (genome_spy.Encoding method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.RulerMarkConfig method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.ViewBackground method) (genome_spy.ViewConfig method) filled() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.BrushConfig method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) fillGradientStrength() (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.StyleConfig method) FillOpacity (class in genome_spy) fillOpacity() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.BrushConfig method) (genome_spy.Encoding method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.RulerMarkConfig method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.ViewBackground method) (genome_spy.ViewConfig method) filter() (genome_spy.EventConfig method) (genome_spy.RulerEventConfig method) filter_genes_dispersion() (in module genome_spy.integrations.scanpy.pl) FilterParams (class in genome_spy) FilterScoredLabelsParams (class in genome_spy) find() (genome_spy.Expression method) fitToBand() (genome_spy.MarkProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) FlattenCigarParams (class in genome_spy) FlattenCompressedExonsParams (class in genome_spy) FlattenDelimitedParams (class in genome_spy) FlattenParams (class in genome_spy) FlattenSequenceParams (class in genome_spy) floor() (genome_spy.expr class method) flushX() (genome_spy.MarkProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) flushY() (genome_spy.MarkProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) font() (genome_spy.FacetHeader method) (genome_spy.MarkProps method) (genome_spy.MeasureTextParams method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.Title method) (genome_spy.TitleConfig method) (genome_spy.TransformParams method) (genome_spy.TruncateTextParams method) fontSize() (genome_spy.FacetHeader method) (genome_spy.MeasureTextParams method) (genome_spy.PackLegendLabelsParams method) (genome_spy.StyleConfig method) (genome_spy.Title method) (genome_spy.TitleConfig method) (genome_spy.TransformParams method) (genome_spy.TruncateTextParams method) FontStyle (class in genome_spy) fontStyle() (genome_spy.FacetHeader method) (genome_spy.MarkProps method) (genome_spy.MeasureTextParams method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.Title method) (genome_spy.TitleConfig method) (genome_spy.TransformParams method) (genome_spy.TruncateTextParams method) FontWeight (class in genome_spy) fontWeight() (genome_spy.FacetHeader method) (genome_spy.MarkProps method) (genome_spy.MeasureTextParams method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.Title method) (genome_spy.TitleConfig method) (genome_spy.TransformParams method) (genome_spy.TruncateTextParams method) for_() (genome_spy.Step method) format() (genome_spy.Angle method) (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.Color method) (genome_spy.ColorDef method) (genome_spy.ConditionalMarkPropFieldDefType method) (genome_spy.ConditionalMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropFieldDefType method) (genome_spy.ConditionalParameterMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalTestMarkPropFieldDefType method) (genome_spy.ConditionalTestMarkPropFieldDefTypeForShape method) (genome_spy.CrossData method) (genome_spy.Data method) (genome_spy.DataSource method) (genome_spy.Direction method) (genome_spy.DirectionDef method) (genome_spy.Dx method) (genome_spy.Dy method) (genome_spy.DynamicCallbackData method) (genome_spy.expr class method) (genome_spy.Expression method) (genome_spy.FacetHeader method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeForShapeStringNull method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeNumber method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeStringNull method) (genome_spy.Fill method) (genome_spy.FillOpacity method) (genome_spy.GenomeAxis method) (genome_spy.InlineData method) (genome_spy.LazyDataParams method) (genome_spy.MarkPropDefNumber method) (genome_spy.MarkPropDefStringNull method) (genome_spy.MarkPropDefStringNullTypeForShape method) (genome_spy.NamedData method) (genome_spy.NumericMarkPropDef method) (genome_spy.OffsetDef method) (genome_spy.Opacity method) (genome_spy.Shape method) (genome_spy.ShapeDef method) (genome_spy.Size method) (genome_spy.StringDatumDef method) (genome_spy.StringFieldDef method) (genome_spy.Stroke method) (genome_spy.StrokeOpacity method) (genome_spy.StrokeWidth method) (genome_spy.StyleConfig method) (genome_spy.Text method) (genome_spy.TextDef method) (genome_spy.Tooltip method) (genome_spy.TooltipDef method) (genome_spy.UrlData method) (genome_spy.XOffset method) (genome_spy.YOffset method) format_map() (genome_spy.Expression method) FormulaParams (class in genome_spy) frame() (genome_spy.FacetHeader method) (genome_spy.StyleConfig method) (genome_spy.Title method) (genome_spy.TitleConfig method) (genome_spy.TransformParams method) (genome_spy.WindowParams method) from_() (genome_spy.CoordinateLookupParams method) (genome_spy.CrossParams method) (genome_spy.LookupParams method) (genome_spy.TransformParams method) from_anndata() (in module genome_spy.anndata) from_dict() (genome_spy.Chart class method) (genome_spy.ConcatChart class method) (genome_spy.FacetChart class method) (genome_spy.HConcatChart class method) (genome_spy.LayerChart class method) (genome_spy.MultiscaleChart class method) (genome_spy.SurroundChart class method) (genome_spy.TopLevelSpec class method) (genome_spy.VConcatChart class method) from_json() (genome_spy.Chart class method) (genome_spy.ConcatChart class method) (genome_spy.FacetChart class method) (genome_spy.HConcatChart class method) (genome_spy.LayerChart class method) (genome_spy.MultiscaleChart class method) (genome_spy.SurroundChart class method) (genome_spy.TopLevelSpec class method) (genome_spy.VConcatChart class method) G gamma() (genome_spy.ScaleInterpolateParams method) gapPositions() (genome_spy.Scale method) (genome_spy.ScaleConfig method) gapWidth() (genome_spy.Scale method) (genome_spy.ScaleConfig method) Generator (class in genome_spy) genome() (genome_spy.CoreRootSpec method) genome_spy.integrations.scanpy.pl module GenomeAxis (class in genome_spy) GenomeConfig (class in genome_spy) GenomeConfigBase (class in genome_spy) GenomeDefinition (class in genome_spy) genomes() (genome_spy.CoreRootSpec method) GenomeSpyConfig (class in genome_spy) GenomeSpySchema (class in genome_spy) geometricZoomBound() (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.StyleConfig method) get_embed_api() (genome_spy.JupyterChart method) gff3() (genome_spy.data.LazyNamespace method) Gff3Data (class in genome_spy) GradientIntervalSelectionParameterColor (class in genome_spy) GradientIntervalSelectionParameterFill (class in genome_spy) GradientIntervalSelectionParameterStroke (class in genome_spy) gradientLength() (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) gradientOpacity() (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) gradientStrokeColor() (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) gradientStrokeWidth() (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) gradientThickness() (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) grid() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) gridCap() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) gridColor() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) gridDash() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) gridDashOffset() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) gridOpacity() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) gridWidth() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) groupby() (genome_spy.AggregateParams method) (genome_spy.CollectParams method) (genome_spy.StackParams method) (genome_spy.TransformParams method) (genome_spy.WindowParams method) grow() (genome_spy.SizeDef method) (genome_spy.ViewportSizeDef method) H halfLife() (genome_spy.LerpTransition method) (genome_spy.ParamTransition method) HandledTooltip (class in genome_spy) handler() (genome_spy.HandledTooltip method) hatch() (genome_spy.BrushConfig method) (genome_spy.MarkProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.StyleConfig method) hconcat() (genome_spy.CoreRootSpec method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.ViewSpec method) (in module genome_spy) HConcatChart (class in genome_spy) HConcatSpec (class in genome_spy) headAngle() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) header() (genome_spy.FacetFieldDef method) (genome_spy.GenomeSpyConfig method) headerColumn() (genome_spy.GenomeSpyConfig method) headerRow() (genome_spy.GenomeSpyConfig method) headNotchAngle() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) headPlacement() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) headShape() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) headSpacing() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) headWidth() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) heatmap() (genome_spy.RangeConfig method) (in module genome_spy.integrations.scanpy.pl) height() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.DendrogramParams method) (genome_spy.Displace2DParams method) (genome_spy.ExplicitlyOrderedDendrogramParams method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.IndexDendrogramParams method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SiblingOrderedDendrogramParams method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSpec method) (genome_spy.TransformParams method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) highest_expr_genes() (in module genome_spy.integrations.scanpy.pl) highly_variable_genes() (in module genome_spy.integrations.scanpy.pl) hypot() (genome_spy.expr class method) I IdentifierParams (class in genome_spy) if_() (genome_spy.expr class method) ignorePeers() (genome_spy.TransformParams method) (genome_spy.WindowParams method) import_() (genome_spy.ImportedView method) (genome_spy.ImportSpec method) (genome_spy.SurroundPlotSpec method) import_view() (in module genome_spy) ImportedView (class in genome_spy) ImportSpec (class in genome_spy) includePlotMargin() (genome_spy.SeparatorProps method) index() (genome_spy.Expression method) (genome_spy.FlattenParams method) (genome_spy.ScaleConfig method) (genome_spy.TransformParams method) IndexDendrogramParams (class in genome_spy) indexed_fasta() (genome_spy.data.LazyNamespace method) IndexedFastaData (class in genome_spy) indexof() (genome_spy.expr class method) indexUrl() (genome_spy.BamData method) (genome_spy.Gff3Data method) (genome_spy.IndexedFastaData method) (genome_spy.LazyDataParams method) (genome_spy.TabixTsvData method) (genome_spy.VcfData method) IndexUrlSourceRef (class in genome_spy) IndexUrlTemplate (class in genome_spy) initial() (genome_spy.SelectionDomainRef method) InlineData (class in genome_spy) InlineDataset (class in genome_spy) InlineGenomeConfig (class in genome_spy) InlineGenomeDefinition (class in genome_spy) InlineLocusAssembly (class in genome_spy) input() (genome_spy.BindCheckbox method) (genome_spy.Binding method) (genome_spy.BindInput method) (genome_spy.BindRadioSelect method) (genome_spy.BindRange method) inrange() (genome_spy.expr class method) InteractionEventType (class in genome_spy) interpolate() (genome_spy.Scale method) (genome_spy.ScaleConfig method) IntervalSelectionParameter (class in genome_spy) invert() (genome_spy.expr class method) inwardStroke() (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.StyleConfig method) is_selection (genome_spy.Parameter property) isalnum() (genome_spy.Expression method) isalpha() (genome_spy.Expression method) isArray() (genome_spy.expr class method) isascii() (genome_spy.Expression method) isBoolean() (genome_spy.expr class method) isdecimal() (genome_spy.Expression method) isDefined() (genome_spy.expr class method) isdigit() (genome_spy.Expression method) isFinite() (genome_spy.expr class method) isidentifier() (genome_spy.Expression method) islower() (genome_spy.Expression method) isNaN() (genome_spy.expr class method) isNumber() (genome_spy.expr class method) isnumeric() (genome_spy.Expression method) isObject() (genome_spy.expr class method) isprintable() (genome_spy.Expression method) isRegExp() (genome_spy.expr class method) isspace() (genome_spy.Expression method) isString() (genome_spy.expr class method) istitle() (genome_spy.Expression method) isupper() (genome_spy.Expression method) isValid() (genome_spy.expr class method) J join() (genome_spy.expr class method) (genome_spy.Expression method) JsonDataFormat (class in genome_spy) JupyterChart (class in genome_spy) K Key (class in genome_spy) key() (genome_spy.CoordinateLookupParams method) (genome_spy.DendrogramParams method) (genome_spy.Displace2DParams method) (genome_spy.Encoding method) (genome_spy.ExplicitlyOrderedDendrogramParams method) (genome_spy.IndexDendrogramParams method) (genome_spy.LookupParams method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.SiblingOrderedDendrogramParams method) (genome_spy.TransformParams method) KeyDef (class in genome_spy) L labelAlign() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.AxisLabelLayoutParams method) (genome_spy.GenomeAxis method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) (genome_spy.TransformParams method) labelAngle() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.AxisLabelLayoutParams method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) (genome_spy.TransformParams method) labelBaseline() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.AxisLabelLayoutParams method) (genome_spy.GenomeAxis method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) (genome_spy.TransformParams method) labelColor() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) labelFlush() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.AxisLabelLayoutParams method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) (genome_spy.TransformParams method) labelFlushOffset() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.AxisLabelLayoutParams method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) (genome_spy.TransformParams method) labelFlushZoomExtent() (genome_spy.AxisLabelLayoutParams method) (genome_spy.TransformParams method) labelFont() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) labelFontSize() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.AxisLabelLayoutParams method) (genome_spy.GenomeAxis method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) (genome_spy.TransformParams method) labelFontStyle() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) labelFontWeight() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) labelLimit() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) labelOffset() (genome_spy.AxisLabelLayoutParams method) (genome_spy.LegendConfig method) (genome_spy.PackLegendLabelsParams method) (genome_spy.StyleConfig method) (genome_spy.TransformParams method) labelOverlap() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.AxisLabelLayoutParams method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) (genome_spy.TransformParams method) labelPadding() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) labels() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.Binding method) (genome_spy.BindRadioSelect method) (genome_spy.FacetHeader method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) labelSeparation() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.AxisLabelLayoutParams method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) (genome_spy.TransformParams method) labelSqueeze() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) labelVisible() (genome_spy.AxisLabelLayoutParams method) (genome_spy.TransformParams method) labelWidth() (genome_spy.AxisLabelLayoutParams method) (genome_spy.PackLegendLabelsParams method) (genome_spy.TransformParams method) lane() (genome_spy.FilterScoredLabelsParams method) (genome_spy.TransformParams method) lastindexof() (genome_spy.expr class method) layer() (genome_spy.CoreRootSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.SurroundPlotSpec method) (genome_spy.ViewSpec method) (in module genome_spy) LayerChart (class in genome_spy) LayerSpec (class in genome_spy) layout() (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) lazy() (genome_spy.Data method) (genome_spy.DataSource method) (genome_spy.LazyData method) LazyData (class in genome_spy) LazyDataParams (class in genome_spy) LazyNamespace (class in genome_spy.data) leaf() (genome_spy.DendrogramParams method) (genome_spy.ExplicitlyOrderedDendrogramParams method) (genome_spy.SiblingOrderedDendrogramParams method) (genome_spy.TransformParams method) leafIndex() (genome_spy.DendrogramParams method) (genome_spy.IndexDendrogramParams method) (genome_spy.TransformParams method) leafOrder() (genome_spy.DendrogramParams method) (genome_spy.ExplicitlyOrderedDendrogramParams method) (genome_spy.TransformParams method) left() (genome_spy.LegendLayout method) (genome_spy.OverhangConfig method) (genome_spy.PaddingConfig method) (genome_spy.Paddings method) (genome_spy.SurroundSides method) Legend (class in genome_spy) legend() (genome_spy.Angle method) (genome_spy.Color method) (genome_spy.ColorDef method) (genome_spy.ConditionalMarkPropExprDefType method) (genome_spy.ConditionalMarkPropExprDefTypeForShape method) (genome_spy.ConditionalMarkPropFieldDefType method) (genome_spy.ConditionalMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropExprDefType method) (genome_spy.ConditionalParameterMarkPropExprDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropFieldDefType method) (genome_spy.ConditionalParameterMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalTestMarkPropExprDefType method) (genome_spy.ConditionalTestMarkPropExprDefTypeForShape method) (genome_spy.ConditionalTestMarkPropFieldDefType method) (genome_spy.ConditionalTestMarkPropFieldDefTypeForShape method) (genome_spy.Dx method) (genome_spy.Dy method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeForShapeStringNull method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeNumber method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeStringNull method) (genome_spy.Fill method) (genome_spy.FillOpacity method) (genome_spy.GenomeSpyConfig method) (genome_spy.integrations.scanpy.pl.DotPlot method) (genome_spy.integrations.scanpy.pl.EmbeddingSummary method) (genome_spy.integrations.scanpy.pl.MatrixPlot method) (genome_spy.MarkPropDefNumber method) (genome_spy.MarkPropDefStringNull method) (genome_spy.MarkPropDefStringNullTypeForShape method) (genome_spy.MarkPropExprDef method) (genome_spy.MarkPropExprDefType method) (genome_spy.MarkPropExprDefTypeForShape method) (genome_spy.NumericMarkPropDef method) (genome_spy.OffsetDef method) (genome_spy.Opacity method) (genome_spy.Shape method) (genome_spy.ShapeDef method) (genome_spy.Size method) (genome_spy.Stroke method) (genome_spy.StrokeOpacity method) (genome_spy.StrokeWidth method) (genome_spy.XOffset method) (genome_spy.YOffset method) LegendConfig (class in genome_spy) LegendDirection (class in genome_spy) LegendLayout (class in genome_spy) LegendOrient (class in genome_spy) LegendRegionAnchor (class in genome_spy) LegendRegionLayout (class in genome_spy) LegendResolutionBehavior (class in genome_spy) legends() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) LegendTitleOrient (class in genome_spy) legendTrack() (genome_spy.GenomeSpyConfig method) length() (genome_spy.Displace1DParams method) (genome_spy.expr class method) (genome_spy.TransformParams method) lerp() (genome_spy.expr class method) LerpTransition (class in genome_spy) limit() (genome_spy.TransformParams method) (genome_spy.TruncateTextParams method) LinearizeGenomicCoordinateParams (class in genome_spy) linearstep() (genome_spy.expr class method) link() (genome_spy.GenomeSpyConfig method) LinkConfig (class in genome_spy) LinkProps (class in genome_spy) linkShape() (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) ljust() (genome_spy.Expression method) load_dataset() (in module genome_spy.datasets) locus() (genome_spy.ScaleConfig method) Locus() (in module genome_spy) locus() (in module genome_spy) log() (genome_spy.expr class method) logoLetters() (genome_spy.MarkProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) LookupParams (class in genome_spy) LookupSelfInput (class in genome_spy) lower() (genome_spy.expr class method) (genome_spy.Expression method) lstrip() (genome_spy.Expression method) M maketrans() (genome_spy.Expression static method) mapHasKey() (genome_spy.expr class method) mark() (genome_spy.Chart method) (genome_spy.CoreRootSpec method) (genome_spy.GenomeSpyConfig method) (genome_spy.RulerConfig method) (genome_spy.SurroundPlotSpec method) (genome_spy.UnitSpec method) (genome_spy.ViewSpec method) mark_arrow() (genome_spy.Chart method) mark_circle() (genome_spy.Chart method) mark_link() (genome_spy.Chart method) mark_point() (genome_spy.Chart method) mark_rect() (genome_spy.Chart method) mark_rule() (genome_spy.Chart method) mark_text() (genome_spy.Chart method) mark_tick() (genome_spy.Chart method) MarkConfig (class in genome_spy) MarkPropDefNumber (class in genome_spy) MarkPropDefStringNull (class in genome_spy) MarkPropDefStringNullTypeForShape (class in genome_spy) MarkPropExprDef (class in genome_spy) MarkPropExprDefType (class in genome_spy) MarkPropExprDefTypeForShape (class in genome_spy) MarkProps (class in genome_spy) MarkType (class in genome_spy) matrix() (in module genome_spy.integrations.scanpy.pl) MatrixPlot (class in genome_spy.integrations.scanpy.pl) matrixplot() (in module genome_spy.integrations.scanpy.pl) max() (genome_spy.Binding method) (genome_spy.BindRange method) (genome_spy.expr class method) maxChordLength() (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) maxExtent() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) maxPx() (genome_spy.SizeDef method) (genome_spy.ViewportSizeDef method) maxSummaryPixels() (genome_spy.FigWigData method) (genome_spy.LazyDataParams method) maxValues() (genome_spy.MultiUrlSourceRef method) (genome_spy.SingleUrlSourceRef method) (genome_spy.UrlSourceRef method) (genome_spy.UrlTemplate method) md() (genome_spy.AlignmentMismatchesParams method) (genome_spy.TransformParams method) measure() (genome_spy.BrushConfig method) MeasureTextParams (class in genome_spy) membership() (genome_spy.SetIntersectionParams method) (genome_spy.TransformParams method) MergeFacetsParams (class in genome_spy) metric() (genome_spy.FadedMultiscaleStops method) (genome_spy.MultiscaleStops method) (genome_spy.MultiscaleStopsDef method) (genome_spy.TransitionedMultiscaleStops method) min() (genome_spy.Binding method) (genome_spy.BindRange method) (genome_spy.expr class method) minArcHeight() (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) minExtent() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) minHeight() (genome_spy.BrushConfig method) (genome_spy.MarkProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.StyleConfig method) minLength() (genome_spy.MarkProps method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.TickConfig method) (genome_spy.TickProps method) minOpacity() (genome_spy.BrushConfig method) (genome_spy.MarkProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.StyleConfig method) minPickingSize() (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.StyleConfig method) minPx() (genome_spy.SizeDef method) (genome_spy.ViewportSizeDef method) minSize() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) minStemLength() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) minWidth() (genome_spy.BrushConfig method) (genome_spy.MarkProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.StyleConfig method) mode() (genome_spy.FigWigData method) (genome_spy.LazyDataParams method) (genome_spy.ViewportDomainRef method) module genome_spy.integrations.scanpy.pl multiscale() (genome_spy.CoreRootSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SurroundPlotSpec method) (genome_spy.ViewSpec method) (in module genome_spy) MultiscaleChart (class in genome_spy) MultiscaleSpec (class in genome_spy) MultiscaleStops (class in genome_spy) MultiscaleStopsDef (class in genome_spy) MultiUrlSourceRef (class in genome_spy) N name (genome_spy.Parameter property) name() (genome_spy.BindCheckbox method) (genome_spy.Binding method) (genome_spy.BindInput method) (genome_spy.BindRadioSelect method) (genome_spy.BindRange method) (genome_spy.CategorySelectionParameterColor method) (genome_spy.CategorySelectionParameterFill method) (genome_spy.CategorySelectionParameterShape method) (genome_spy.CategorySelectionParameterStroke method) (genome_spy.CategorySelectionParameterX method) (genome_spy.CategorySelectionParameterY method) (genome_spy.Chart method) (genome_spy.ColorSchemeConfig method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.Contig method) (genome_spy.CoreRootSpec method) (genome_spy.CrossData method) (genome_spy.Data method) (genome_spy.DataSource method) (genome_spy.DebouncedExprParameter method) (genome_spy.DynamicCallbackData method) (genome_spy.ExprParameter method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.Generator method) (genome_spy.GenomeConfig method) (genome_spy.GenomeConfigBase method) (genome_spy.GradientIntervalSelectionParameterColor method) (genome_spy.GradientIntervalSelectionParameterFill method) (genome_spy.GradientIntervalSelectionParameterStroke method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.ImportedView method) (genome_spy.ImportSpec method) (genome_spy.InlineData method) (genome_spy.InlineGenomeConfig method) (genome_spy.IntervalSelectionParameter method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.NamedData method) (genome_spy.PlainExprParameter method) (genome_spy.PlainValueParameter method) (genome_spy.PositionalIntervalSelectionParameter method) (genome_spy.RecordSelectionParameter method) (genome_spy.RulerParameter method) (genome_spy.Scale method) (genome_spy.ScaleConfig method) (genome_spy.SchemeParams method) (genome_spy.SelectionParameter method) (genome_spy.SequenceGenerator method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.TransformOutput method) (genome_spy.TransitionedExprParameter method) (genome_spy.TransitionedValueParameter method) (genome_spy.UnitSpec method) (genome_spy.UrlData method) (genome_spy.UrlGenomeConfig method) (genome_spy.ValueParameter method) (genome_spy.VariableParameter method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) name_is_explicit (genome_spy.Parameter property) NamedData (class in genome_spy) NamedGenomeConfig (class in genome_spy) NamedSelectionPredicateRef (class in genome_spy) nice() (genome_spy.Scale method) (genome_spy.ScaleConfig method) noFadingOnPointSelection() (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) noFadingOnSecondPass() (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) nominal() (genome_spy.ScaleConfig method) nominalColorScheme() (genome_spy.ScaleConfig method) not_() (genome_spy.SelectionPredicateDefinition method) (genome_spy.SelectionPredicateOperand method) numberingOffset() (genome_spy.Scale method) (genome_spy.ScaleConfig method) NumericDomain (class in genome_spy) NumericMarkPropDef (class in genome_spy) NumericStopDef (class in genome_spy) NumericValueDef (class in genome_spy) O offset() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.ChromPosDef method) (genome_spy.FacetHeader method) (genome_spy.GenomeAxis method) (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.LinearizeGenomicCoordinateParams method) (genome_spy.Position2Def method) (genome_spy.PositionDef method) (genome_spy.SecondaryChromPosDef method) (genome_spy.StackParams method) (genome_spy.StyleConfig method) (genome_spy.Title method) (genome_spy.TitleConfig method) (genome_spy.TransformParams method) (genome_spy.X method) (genome_spy.X2 method) (genome_spy.Y method) (genome_spy.Y2 method) OffsetChannel (class in genome_spy) OffsetDef (class in genome_spy) on() (genome_spy.RulerConfig method) onLoadError() (genome_spy.MultiUrlSourceRef method) (genome_spy.SingleUrlSourceRef method) (genome_spy.UrlSourceRef method) (genome_spy.UrlTemplate method) Opacity (class in genome_spy) opacity() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.BrushConfig method) (genome_spy.Chart method) (genome_spy.CoreRootSpec method) (genome_spy.Encoding method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkConfig method) (genome_spy.MarkProps method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.RulerMarkConfig method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.SurroundPlotSpec method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.TickConfig method) (genome_spy.TickProps method) (genome_spy.UnitSpec method) (genome_spy.ViewSpec method) ops() (genome_spy.AggregateParams method) (genome_spy.TransformParams method) (genome_spy.WindowParams method) options() (genome_spy.Binding method) (genome_spy.BindRadioSelect method) or_() (genome_spy.SelectionPredicateDefinition method) (genome_spy.SelectionPredicateOperand method) Order (class in genome_spy) order() (genome_spy.CompareParams method) (genome_spy.Encoding method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) OrderCondition (class in genome_spy) OrderDef (class in genome_spy) ordinal() (genome_spy.ScaleConfig method) ordinalColorScheme() (genome_spy.ScaleConfig method) orient() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.FacetHeader method) (genome_spy.GenomeAxis method) (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) (genome_spy.TickConfig method) (genome_spy.TickProps method) (genome_spy.Title method) (genome_spy.TitleConfig method) OtherDataFormat (class in genome_spy) overhang() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) OverhangConfig (class in genome_spy) P PackLegendLabelsParams (class in genome_spy) padding() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.FilterScoredLabelsParams method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.Scale method) (genome_spy.ScaleConfig method) (genome_spy.StyleConfig method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.TransformParams method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) PaddingConfig (class in genome_spy) paddingInner() (genome_spy.Scale method) (genome_spy.ScaleConfig method) paddingOuter() (genome_spy.Scale method) (genome_spy.ScaleConfig method) Paddings (class in genome_spy) paddingX() (genome_spy.MarkProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) paddingY() (genome_spy.MarkProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) paga() (in module genome_spy.integrations.scanpy.pl) paga_adjacency() (in module genome_spy.integrations.scanpy.pl) paga_compare() (in module genome_spy.integrations.scanpy.pl) paga_path() (in module genome_spy.integrations.scanpy.pl) param() (genome_spy.ConditionalMarkPropExprDefType method) (genome_spy.ConditionalMarkPropExprDefTypeForShape method) (genome_spy.ConditionalMarkPropFieldDefType method) (genome_spy.ConditionalMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropExprDefType method) (genome_spy.ConditionalParameterMarkPropExprDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropFieldDefType method) (genome_spy.ConditionalParameterMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterScaleDatumDef method) (genome_spy.ConditionalParameterValueDefNumberExprRef method) (genome_spy.ConditionalParameterValueDefStringNullExprRef method) (genome_spy.ConditionalScaleDatumDef method) (genome_spy.ConditionalValueDefNumberExprRef method) (genome_spy.ConditionalValueDefStringNullExprRef method) (genome_spy.FilterParams method) (genome_spy.OrderCondition method) (genome_spy.ParameterPredicate method) (genome_spy.SelectionDomainRef method) (genome_spy.SelectionFilterParams method) (genome_spy.SelectionPredicateDefinition method) (genome_spy.SelectionPredicateOperand method) (genome_spy.SelectionUnionTest method) (genome_spy.TransformParams method) (genome_spy.ValuesParams method) (in module genome_spy) Parameter (class in genome_spy) ParameterPredicate (class in genome_spy) params() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.HandledTooltip method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.ImportedView method) (genome_spy.ImportSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.TransformParams method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) (genome_spy.WindowParams method) ParamTransition (class in genome_spy) parentKey() (genome_spy.DendrogramParams method) (genome_spy.ExplicitlyOrderedDendrogramParams method) (genome_spy.IndexDendrogramParams method) (genome_spy.SiblingOrderedDendrogramParams method) (genome_spy.TransformParams method) Parse (class in genome_spy) parse() (genome_spy.BedDataFormat method) (genome_spy.BedpeDataFormat method) (genome_spy.CsvDataFormat method) (genome_spy.DataFormat method) (genome_spy.DsvDataFormat method) (genome_spy.JsonDataFormat method) (genome_spy.LazyDataParams method) (genome_spy.OtherDataFormat method) (genome_spy.TabixTsvData method) (genome_spy.VcfDataFormat method) (genome_spy.WigDataFormat method) (in module genome_spy) parseFloat() (genome_spy.expr class method) parseInt() (genome_spy.expr class method) ParseValue (class in genome_spy) partition() (genome_spy.Expression method) pca() (in module genome_spy.integrations.scanpy.pl) pca_loadings() (in module genome_spy.integrations.scanpy.pl) pca_overview() (in module genome_spy.integrations.scanpy.pl) pca_scatter() (in module genome_spy.integrations.scanpy.pl) pca_variance_ratio() (in module genome_spy.integrations.scanpy.pl) persist() (genome_spy.CategorySelectionParameterColor method) (genome_spy.CategorySelectionParameterFill method) (genome_spy.CategorySelectionParameterShape method) (genome_spy.CategorySelectionParameterStroke method) (genome_spy.CategorySelectionParameterX method) (genome_spy.CategorySelectionParameterY method) (genome_spy.DebouncedExprParameter method) (genome_spy.ExprParameter method) (genome_spy.GradientIntervalSelectionParameterColor method) (genome_spy.GradientIntervalSelectionParameterFill method) (genome_spy.GradientIntervalSelectionParameterStroke method) (genome_spy.IntervalSelectionParameter method) (genome_spy.PlainExprParameter method) (genome_spy.PlainValueParameter method) (genome_spy.PositionalIntervalSelectionParameter method) (genome_spy.RecordSelectionParameter method) (genome_spy.RulerParameter method) (genome_spy.SelectionParameter method) (genome_spy.TransitionedExprParameter method) (genome_spy.TransitionedValueParameter method) (genome_spy.ValueParameter method) (genome_spy.VariableParameter method) PileupParams (class in genome_spy) pixelsPerBin() (genome_spy.BigWigData method) (genome_spy.FigWigData method) (genome_spy.LazyDataParams method) placeholder() (genome_spy.Binding method) (genome_spy.BindInput method) placement() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) PlainExprParameter (class in genome_spy) PlainValueParameter (class in genome_spy) point() (genome_spy.GenomeSpyConfig method) PointConfig (class in genome_spy) PointProps (class in genome_spy) pos() (genome_spy.ChromosomalLocus method) (genome_spy.ChromPosDef method) (genome_spy.Displace1DParams method) (genome_spy.FilterScoredLabelsParams method) (genome_spy.LinearizeGenomicCoordinateParams method) (genome_spy.Position2Def method) (genome_spy.PositionDef method) (genome_spy.RulerChannelValue method) (genome_spy.SecondaryChromPosDef method) (genome_spy.TransformParams method) (genome_spy.X method) (genome_spy.X2 method) (genome_spy.Y method) (genome_spy.Y2 method) pos2() (genome_spy.FilterScoredLabelsParams method) (genome_spy.TransformParams method) Position2Def (class in genome_spy) PositionalChannel (class in genome_spy) PositionalIntervalSelectionParameter (class in genome_spy) PositionDatumDef (class in genome_spy) PositionDef (class in genome_spy) PositionExprDef (class in genome_spy) positionFactor() (genome_spy.Displace1DParams method) (genome_spy.TransformParams method) PositionFieldDef (class in genome_spy) PositionValueDef (class in genome_spy) pow() (genome_spy.expr class method) predicates() (genome_spy.Chart method) (genome_spy.CoreRootSpec method) (genome_spy.SurroundPlotSpec method) (genome_spy.UnitSpec method) (genome_spy.ViewSpec method) preference() (genome_spy.PileupParams method) (genome_spy.TransformParams method) preferredOrder() (genome_spy.PileupParams method) (genome_spy.TransformParams method) PrimaryPositionalChannel (class in genome_spy) project() (genome_spy.ConditionalMarkPropExprDefType method) (genome_spy.ConditionalMarkPropExprDefTypeForShape method) (genome_spy.ConditionalMarkPropFieldDefType method) (genome_spy.ConditionalMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropExprDefType method) (genome_spy.ConditionalParameterMarkPropExprDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropFieldDefType method) (genome_spy.ConditionalParameterMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterScaleDatumDef method) (genome_spy.ConditionalParameterValueDefNumberExprRef method) (genome_spy.ConditionalParameterValueDefStringNullExprRef method) (genome_spy.ConditionalScaleDatumDef method) (genome_spy.ConditionalValueDefNumberExprRef method) (genome_spy.ConditionalValueDefStringNullExprRef method) (genome_spy.OrderCondition method) (genome_spy.ParameterPredicate method) (genome_spy.SelectionPredicateDefinition method) (genome_spy.SelectionPredicateOperand method) ProjectParams (class in genome_spy) properties() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.VConcatChart method) property() (genome_spy.DataFormat method) (genome_spy.JsonDataFormat method) push() (genome_spy.CategorySelectionParameterColor method) (genome_spy.CategorySelectionParameterFill method) (genome_spy.CategorySelectionParameterShape method) (genome_spy.CategorySelectionParameterStroke method) (genome_spy.CategorySelectionParameterX method) (genome_spy.CategorySelectionParameterY method) (genome_spy.DebouncedExprParameter method) (genome_spy.ExprParameter method) (genome_spy.GradientIntervalSelectionParameterColor method) (genome_spy.GradientIntervalSelectionParameterFill method) (genome_spy.GradientIntervalSelectionParameterStroke method) (genome_spy.IntervalSelectionParameter method) (genome_spy.PlainExprParameter method) (genome_spy.PlainValueParameter method) (genome_spy.PositionalIntervalSelectionParameter method) (genome_spy.RecordSelectionParameter method) (genome_spy.RulerParameter method) (genome_spy.SelectionParameter method) (genome_spy.TransformOutput method) (genome_spy.TransitionedExprParameter method) (genome_spy.TransitionedValueParameter method) (genome_spy.ValueParameter method) (genome_spy.VariableParameter method) px() (genome_spy.SizeDef method) (genome_spy.ViewportSizeDef method) Q quality() (genome_spy.AlignmentMismatchesParams method) (genome_spy.TransformParams method) quantitative() (genome_spy.ScaleConfig method) quantitativeColorScheme() (genome_spy.ScaleConfig method) R ramp() (genome_spy.RangeConfig method) random() (genome_spy.expr class method) range() (genome_spy.expr class method) (genome_spy.GenomeSpyConfig method) (genome_spy.Scale method) (genome_spy.ScaleConfig method) RangeConfig (class in genome_spy) rank_genes_groups() (in module genome_spy.integrations.scanpy.pl) rank_genes_groups_dotplot() (in module genome_spy.integrations.scanpy.pl) rank_genes_groups_heatmap() (in module genome_spy.integrations.scanpy.pl) rank_genes_groups_matrixplot() (in module genome_spy.integrations.scanpy.pl) ranking() (in module genome_spy.integrations.scanpy.pl) RecordSelectionParameter (class in genome_spy) rect() (genome_spy.GenomeSpyConfig method) RectConfig (class in genome_spy) RectProps (class in genome_spy) ref() (genome_spy.NamedSelectionPredicateRef method) regex() (genome_spy.RegexExtractParams method) (genome_spy.TransformParams method) RegexExtractParams (class in genome_spy) RegexFoldParams (class in genome_spy) regexp() (genome_spy.expr class method) removeprefix() (genome_spy.Expression method) removesuffix() (genome_spy.Expression method) replace() (genome_spy.expr class method) (genome_spy.Expression method) reserve() (genome_spy.FacetHeader method) (genome_spy.StyleConfig method) (genome_spy.Title method) (genome_spy.TitleConfig method) ResolutionBehavior (class in genome_spy) resolutionChannel() (genome_spy.Angle method) (genome_spy.ChromPosDef method) (genome_spy.Color method) (genome_spy.ColorDef method) (genome_spy.ConditionalMarkPropExprDefType method) (genome_spy.ConditionalMarkPropExprDefTypeForShape method) (genome_spy.ConditionalMarkPropFieldDefType method) (genome_spy.ConditionalMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropExprDefType method) (genome_spy.ConditionalParameterMarkPropExprDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropFieldDefType method) (genome_spy.ConditionalParameterMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterScaleDatumDef method) (genome_spy.ConditionalScaleDatumDef method) (genome_spy.ConditionalTestMarkPropExprDefType method) (genome_spy.ConditionalTestMarkPropExprDefTypeForShape method) (genome_spy.ConditionalTestMarkPropFieldDefType method) (genome_spy.ConditionalTestMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalTestScaleDatumDef method) (genome_spy.Direction method) (genome_spy.DirectionDef method) (genome_spy.Dx method) (genome_spy.Dy method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeForShapeStringNull method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeNumber method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeStringNull method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefNumber method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefStringNull method) (genome_spy.Fill method) (genome_spy.FillOpacity method) (genome_spy.MarkPropDefNumber method) (genome_spy.MarkPropDefStringNull method) (genome_spy.MarkPropDefStringNullTypeForShape method) (genome_spy.MarkPropExprDef method) (genome_spy.MarkPropExprDefType method) (genome_spy.MarkPropExprDefTypeForShape method) (genome_spy.NumericMarkPropDef method) (genome_spy.OffsetDef method) (genome_spy.Opacity method) (genome_spy.Position2Def method) (genome_spy.PositionDatumDef method) (genome_spy.PositionDef method) (genome_spy.PositionFieldDef method) (genome_spy.Shape method) (genome_spy.ShapeDef method) (genome_spy.Size method) (genome_spy.StringDatumDef method) (genome_spy.Stroke method) (genome_spy.StrokeOpacity method) (genome_spy.StrokeWidth method) (genome_spy.Text method) (genome_spy.TextDef method) (genome_spy.Tooltip method) (genome_spy.TooltipDef method) (genome_spy.X method) (genome_spy.X2 method) (genome_spy.XOffset method) (genome_spy.Y method) (genome_spy.Y2 method) (genome_spy.YOffset method) ResolutionMapLegendResolutionBehavior (class in genome_spy) ResolutionMapResolutionBehavior (class in genome_spy) resolve() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) resolve_axis() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) resolve_legend() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) resolve_references() (genome_spy.AggregateOp class method) (genome_spy.AggregateParams class method) (genome_spy.Align class method) (genome_spy.AlignmentMismatchesParams class method) (genome_spy.ArrowConfig class method) (genome_spy.ArrowDirection class method) (genome_spy.ArrowProps class method) (genome_spy.ArrowRelativeSize class method) (genome_spy.ArrowSize class method) (genome_spy.Axis class method) (genome_spy.AxisConfig class method) (genome_spy.AxisGenomeData class method) (genome_spy.AxisLabelLayoutParams class method) (genome_spy.AxisOrient class method) (genome_spy.AxisPlacement class method) (genome_spy.AxisTicksData class method) (genome_spy.BamData class method) (genome_spy.Baseline class method) (genome_spy.BedDataFormat class method) (genome_spy.BedpeDataFormat class method) (genome_spy.BigBedData class method) (genome_spy.BigWigData class method) (genome_spy.BindCheckbox class method) (genome_spy.Binding class method) (genome_spy.BindInput class method) (genome_spy.BindRadioSelect class method) (genome_spy.BindRange class method) (genome_spy.BranchParams class method) (genome_spy.BrushConfig class method) (genome_spy.BuiltInThemeName class method) (genome_spy.CategorySelectionChannel class method) (genome_spy.CategorySelectionParameterColor class method) (genome_spy.CategorySelectionParameterFill class method) (genome_spy.CategorySelectionParameterShape class method) (genome_spy.CategorySelectionParameterStroke class method) (genome_spy.CategorySelectionParameterX class method) (genome_spy.CategorySelectionParameterY class method) (genome_spy.ChannelWithScale class method) (genome_spy.Chart class method) (genome_spy.ChromosomalLocus class method) (genome_spy.ChromPosDef class method) (genome_spy.CollectParams class method) (genome_spy.ColorDef class method) (genome_spy.ColorSchemeConfig class method) (genome_spy.CompareParams class method) (genome_spy.ComplexDomain class method) (genome_spy.ConcatChart class method) (genome_spy.ConcatSpec class method) (genome_spy.ConditionalMarkPropExprDefType class method) (genome_spy.ConditionalMarkPropExprDefTypeForShape class method) (genome_spy.ConditionalMarkPropFieldDefType class method) (genome_spy.ConditionalMarkPropFieldDefTypeForShape class method) (genome_spy.ConditionalParameterMarkPropExprDefType class method) (genome_spy.ConditionalParameterMarkPropExprDefTypeForShape class method) (genome_spy.ConditionalParameterMarkPropFieldDefType class method) (genome_spy.ConditionalParameterMarkPropFieldDefTypeForShape class method) (genome_spy.ConditionalParameterScaleDatumDef class method) (genome_spy.ConditionalParameterValueDefNumberExprRef class method) (genome_spy.ConditionalParameterValueDefStringNullExprRef class method) (genome_spy.ConditionalScaleDatumDef class method) (genome_spy.ConditionalTestMarkPropExprDefType class method) (genome_spy.ConditionalTestMarkPropExprDefTypeForShape class method) (genome_spy.ConditionalTestMarkPropFieldDefType class method) (genome_spy.ConditionalTestMarkPropFieldDefTypeForShape class method) (genome_spy.ConditionalTestScaleDatumDef class method) (genome_spy.ConditionalTestValueDefNumberExprRef class method) (genome_spy.ConditionalTestValueDefStringNullExprRef class method) (genome_spy.ConditionalValueDefNumberExprRef class method) (genome_spy.ConditionalValueDefStringNullExprRef class method) (genome_spy.Contig class method) (genome_spy.CoordinateLookupInput class method) (genome_spy.CoordinateLookupParams class method) (genome_spy.CoreRootSpec class method) (genome_spy.CoverageParams class method) (genome_spy.CrossData class method) (genome_spy.CrossInput class method) (genome_spy.CrossParams class method) (genome_spy.CsvDataFormat class method) (genome_spy.Data class method) (genome_spy.DataFormat class method) (genome_spy.DataSource class method) (genome_spy.DebouncedExprParameter class method) (genome_spy.DendrogramParams class method) (genome_spy.DirectionDef class method) (genome_spy.Displace1DParams class method) (genome_spy.Displace2DParams class method) (genome_spy.DomainValue class method) (genome_spy.DomainValueArray class method) (genome_spy.DomEventType class method) (genome_spy.DsvDataFormat class method) (genome_spy.DynamicCallbackData class method) (genome_spy.DynamicOpacity class method) (genome_spy.Encoding class method) (genome_spy.EventConfig class method) (genome_spy.ExplicitlyOrderedDendrogramParams class method) (genome_spy.expr class method) (genome_spy.ExprDef class method) (genome_spy.ExprFilterParams class method) (genome_spy.ExprParameter class method) (genome_spy.ExprRef class method) (genome_spy.FacetChart class method) (genome_spy.FacetFieldDef class method) (genome_spy.FacetHeader class method) (genome_spy.FacetMapping class method) (genome_spy.FacetSpacing class method) (genome_spy.FacetSpec class method) (genome_spy.FadedMultiscaleStops class method) (genome_spy.Field class method) (genome_spy.FieldDefWithoutScale class method) (genome_spy.FieldName class method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeForShapeStringNull class method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeNumber class method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeStringNull class method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefNumber class method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefStringNull class method) (genome_spy.FigWigData class method) (genome_spy.FilterParams class method) (genome_spy.FilterScoredLabelsParams class method) (genome_spy.FlattenCigarParams class method) (genome_spy.FlattenCompressedExonsParams class method) (genome_spy.FlattenDelimitedParams class method) (genome_spy.FlattenParams class method) (genome_spy.FlattenSequenceParams class method) (genome_spy.FontStyle class method) (genome_spy.FontWeight class method) (genome_spy.FormulaParams class method) (genome_spy.Generator class method) (genome_spy.GenomeAxis class method) (genome_spy.GenomeConfig class method) (genome_spy.GenomeConfigBase class method) (genome_spy.GenomeDefinition class method) (genome_spy.GenomeSpyConfig class method) (genome_spy.GenomeSpySchema class method) (genome_spy.Gff3Data class method) (genome_spy.GradientIntervalSelectionParameterColor class method) (genome_spy.GradientIntervalSelectionParameterFill class method) (genome_spy.GradientIntervalSelectionParameterStroke class method) (genome_spy.HandledTooltip class method) (genome_spy.HConcatChart class method) (genome_spy.HConcatSpec class method) (genome_spy.IdentifierParams class method) (genome_spy.ImportedView class method) (genome_spy.ImportSpec class method) (genome_spy.IndexDendrogramParams class method) (genome_spy.IndexedFastaData class method) (genome_spy.IndexUrlSourceRef class method) (genome_spy.IndexUrlTemplate class method) (genome_spy.InlineData class method) (genome_spy.InlineDataset class method) (genome_spy.InlineGenomeConfig class method) (genome_spy.InlineGenomeDefinition class method) (genome_spy.InlineLocusAssembly class method) (genome_spy.InteractionEventType class method) (genome_spy.IntervalSelectionParameter class method) (genome_spy.JsonDataFormat class method) (genome_spy.KeyDef class method) (genome_spy.LayerChart class method) (genome_spy.LayerSpec class method) (genome_spy.LazyData class method) (genome_spy.LazyDataParams class method) (genome_spy.Legend class method) (genome_spy.LegendConfig class method) (genome_spy.LegendDirection class method) (genome_spy.LegendLayout class method) (genome_spy.LegendOrient class method) (genome_spy.LegendRegionAnchor class method) (genome_spy.LegendRegionLayout class method) (genome_spy.LegendResolutionBehavior class method) (genome_spy.LegendTitleOrient class method) (genome_spy.LerpTransition class method) (genome_spy.LinearizeGenomicCoordinateParams class method) (genome_spy.LinkConfig class method) (genome_spy.LinkProps class method) (genome_spy.LookupParams class method) (genome_spy.LookupSelfInput class method) (genome_spy.MarkConfig class method) (genome_spy.MarkPropDefNumber class method) (genome_spy.MarkPropDefStringNull class method) (genome_spy.MarkPropDefStringNullTypeForShape class method) (genome_spy.MarkPropExprDef class method) (genome_spy.MarkPropExprDefType class method) (genome_spy.MarkPropExprDefTypeForShape class method) (genome_spy.MarkProps class method) (genome_spy.MarkType class method) (genome_spy.MeasureTextParams class method) (genome_spy.MergeFacetsParams class method) (genome_spy.MultiscaleChart class method) (genome_spy.MultiscaleSpec class method) (genome_spy.MultiscaleStops class method) (genome_spy.MultiscaleStopsDef class method) (genome_spy.MultiUrlSourceRef class method) (genome_spy.NamedData class method) (genome_spy.NamedGenomeConfig class method) (genome_spy.NamedSelectionPredicateRef class method) (genome_spy.NumericDomain class method) (genome_spy.NumericMarkPropDef class method) (genome_spy.NumericStopDef class method) (genome_spy.NumericValueDef class method) (genome_spy.OffsetChannel class method) (genome_spy.OffsetDef class method) (genome_spy.OrderCondition class method) (genome_spy.OrderDef class method) (genome_spy.OtherDataFormat class method) (genome_spy.OverhangConfig class method) (genome_spy.PackLegendLabelsParams class method) (genome_spy.PaddingConfig class method) (genome_spy.Paddings class method) (genome_spy.Parameter class method) (genome_spy.ParameterPredicate class method) (genome_spy.ParamTransition class method) (genome_spy.Parse class method) (genome_spy.ParseValue class method) (genome_spy.PileupParams class method) (genome_spy.PlainExprParameter class method) (genome_spy.PlainValueParameter class method) (genome_spy.PointConfig class method) (genome_spy.PointProps class method) (genome_spy.Position2Def class method) (genome_spy.PositionalChannel class method) (genome_spy.PositionalIntervalSelectionParameter class method) (genome_spy.PositionDatumDef class method) (genome_spy.PositionDef class method) (genome_spy.PositionExprDef class method) (genome_spy.PositionFieldDef class method) (genome_spy.PositionValueDef class method) (genome_spy.PrimaryPositionalChannel class method) (genome_spy.ProjectParams class method) (genome_spy.RangeConfig class method) (genome_spy.RecordSelectionParameter class method) (genome_spy.RectConfig class method) (genome_spy.RectProps class method) (genome_spy.RegexExtractParams class method) (genome_spy.RegexFoldParams class method) (genome_spy.ResolutionBehavior class method) (genome_spy.ResolutionMapLegendResolutionBehavior class method) (genome_spy.ResolutionMapResolutionBehavior class method) (genome_spy.Root class method) (genome_spy.RuleConfig class method) (genome_spy.RuleProps class method) (genome_spy.RulerChannelValue class method) (genome_spy.RulerClear class method) (genome_spy.RulerConfig class method) (genome_spy.RulerDisplay class method) (genome_spy.RulerEventConfig class method) (genome_spy.RulerEventType class method) (genome_spy.RulerExtent class method) (genome_spy.RulerInitMapping class method) (genome_spy.RulerMarkConfig class method) (genome_spy.RulerParameter class method) (genome_spy.RulerSnap class method) (genome_spy.RulerSource class method) (genome_spy.SampleParams class method) (genome_spy.Scalar class method) (genome_spy.ScalarDomain class method) (genome_spy.Scale class method) (genome_spy.ScaleConfig class method) (genome_spy.ScaleGroupsData class method) (genome_spy.ScaleInterpolate class method) (genome_spy.ScaleInterpolateParams class method) (genome_spy.ScaleType class method) (genome_spy.SchemeParams class method) (genome_spy.SearchDef class method) (genome_spy.SecondaryChromPosDef class method) (genome_spy.SecondaryOffsetChannel class method) (genome_spy.SecondaryOffsetDef class method) (genome_spy.SecondaryPositionalChannel class method) (genome_spy.SelectionDomainRef class method) (genome_spy.SelectionExtent class method) (genome_spy.SelectionFilterParams class method) (genome_spy.SelectionInitIntervalMapping class method) (genome_spy.SelectionParameter class method) (genome_spy.SelectionPredicateDefinition class method) (genome_spy.SelectionPredicateOperand class method) (genome_spy.SelectionUnionTest class method) (genome_spy.SeparatorProps class method) (genome_spy.SequenceGenerator class method) (genome_spy.SequenceParams class method) (genome_spy.SetIntersectionParams class method) (genome_spy.ShapeDef class method) (genome_spy.SiblingOrderedDendrogramParams class method) (genome_spy.SingleUrlSourceRef class method) (genome_spy.SizeDef class method) (genome_spy.SortOrder class method) (genome_spy.StackParams class method) (genome_spy.Step class method) (genome_spy.StringDatumDef class method) (genome_spy.StringFieldDef class method) (genome_spy.StrokeAlign class method) (genome_spy.StyleConfig class method) (genome_spy.SurroundChart class method) (genome_spy.SurroundPlotSpec class method) (genome_spy.SurroundSide class method) (genome_spy.SurroundSides class method) (genome_spy.SurroundSideSpec class method) (genome_spy.SurroundSpec class method) (genome_spy.TabixTsvData class method) (genome_spy.TemplateImport class method) (genome_spy.TextConfig class method) (genome_spy.TextDef class method) (genome_spy.TextProps class method) (genome_spy.TickConfig class method) (genome_spy.TickProps class method) (genome_spy.Title class method) (genome_spy.TitleAnchor class method) (genome_spy.TitleConfig class method) (genome_spy.TitleFrame class method) (genome_spy.TitleOrient class method) (genome_spy.TooltipDef class method) (genome_spy.TransformOutput class method) (genome_spy.TransformParams class method) (genome_spy.TransitionedExprParameter class method) (genome_spy.TransitionedMultiscaleStops class method) (genome_spy.TransitionedValueParameter class method) (genome_spy.TruncateTextParams class method) (genome_spy.Type class method) (genome_spy.TypeForShape class method) (genome_spy.UnitSpec class method) (genome_spy.UrlData class method) (genome_spy.UrlGenomeConfig class method) (genome_spy.UrlGenomeDefinition class method) (genome_spy.UrlImport class method) (genome_spy.UrlList class method) (genome_spy.UrlSourceRef class method) (genome_spy.UrlTemplate class method) (genome_spy.ValueDefArrowDirection class method) (genome_spy.ValueDefNumber class method) (genome_spy.ValueDefString class method) (genome_spy.ValueDefWithConditionNumberType class method) (genome_spy.ValueDefWithConditionStringNullType class method) (genome_spy.ValueDefWithConditionStringNullTypeForShape class method) (genome_spy.ValueParameter class method) (genome_spy.ValuesParams class method) (genome_spy.VariableParameter class method) (genome_spy.VcfData class method) (genome_spy.VcfDataFormat class method) (genome_spy.VConcatChart class method) (genome_spy.VConcatSpec class method) (genome_spy.ViewBackground class method) (genome_spy.ViewConfig class method) (genome_spy.ViewOpacityDef class method) (genome_spy.ViewportDomainRef class method) (genome_spy.ViewportSizeDef class method) (genome_spy.ViewSpec class method) (genome_spy.WigDataFormat class method) (genome_spy.WindowOnlyOp class method) (genome_spy.WindowOp class method) (genome_spy.WindowParams class method) (genome_spy.ZoomParams class method) resolve_scale() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) reverse() (genome_spy.expr class method) (genome_spy.Scale method) (genome_spy.ScaleConfig method) rfind() (genome_spy.Expression method) right() (genome_spy.LegendLayout method) (genome_spy.OverhangConfig method) (genome_spy.PaddingConfig method) (genome_spy.Paddings method) (genome_spy.SurroundSides method) rindex() (genome_spy.Expression method) rjust() (genome_spy.Expression method) Root (class in genome_spy) round() (genome_spy.expr class method) (genome_spy.Scale method) (genome_spy.ScaleConfig method) row() (genome_spy.FacetMapping method) (genome_spy.FacetSpacing method) rowPadding() (genome_spy.LegendConfig method) (genome_spy.PackLegendLabelsParams method) (genome_spy.StyleConfig method) (genome_spy.TransformParams method) rpartition() (genome_spy.Expression method) rsplit() (genome_spy.Expression method) rstrip() (genome_spy.Expression method) rule() (genome_spy.GenomeSpyConfig method) RuleConfig (class in genome_spy) RuleProps (class in genome_spy) ruler() (genome_spy.RulerParameter method) (in module genome_spy) RulerChannelValue (class in genome_spy) RulerClear (class in genome_spy) RulerConfig (class in genome_spy) RulerDisplay (class in genome_spy) RulerEventConfig (class in genome_spy) RulerEventType (class in genome_spy) RulerExtent (class in genome_spy) RulerInitMapping (class in genome_spy) RulerMarkConfig (class in genome_spy) RulerParameter (class in genome_spy) RulerSnap (class in genome_spy) RulerSource (class in genome_spy) S Sample (class in genome_spy) sample() (genome_spy.Encoding method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) sampleFacetPadding() (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.StyleConfig method) SampleParams (class in genome_spy) save() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) Scalar (class in genome_spy) ScalarDomain (class in genome_spy) Scale (class in genome_spy) scale() (genome_spy.Angle method) (genome_spy.ChromPosDef method) (genome_spy.Color method) (genome_spy.ColorDef method) (genome_spy.ConditionalMarkPropExprDefType method) (genome_spy.ConditionalMarkPropExprDefTypeForShape method) (genome_spy.ConditionalMarkPropFieldDefType method) (genome_spy.ConditionalMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropExprDefType method) (genome_spy.ConditionalParameterMarkPropExprDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropFieldDefType method) (genome_spy.ConditionalParameterMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterScaleDatumDef method) (genome_spy.ConditionalScaleDatumDef method) (genome_spy.ConditionalTestMarkPropExprDefType method) (genome_spy.ConditionalTestMarkPropExprDefTypeForShape method) (genome_spy.ConditionalTestMarkPropFieldDefType method) (genome_spy.ConditionalTestMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalTestScaleDatumDef method) (genome_spy.Direction method) (genome_spy.DirectionDef method) (genome_spy.Dx method) (genome_spy.Dy method) (genome_spy.expr class method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeForShapeStringNull method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeNumber method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeStringNull method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefNumber method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefStringNull method) (genome_spy.Fill method) (genome_spy.FillOpacity method) (genome_spy.GenomeSpyConfig method) (genome_spy.MarkPropDefNumber method) (genome_spy.MarkPropDefStringNull method) (genome_spy.MarkPropDefStringNullTypeForShape method) (genome_spy.MarkPropExprDef method) (genome_spy.MarkPropExprDefType method) (genome_spy.MarkPropExprDefTypeForShape method) (genome_spy.NumericMarkPropDef method) (genome_spy.OffsetDef method) (genome_spy.Opacity method) (genome_spy.Position2Def method) (genome_spy.PositionDatumDef method) (genome_spy.PositionDef method) (genome_spy.PositionFieldDef method) (genome_spy.Shape method) (genome_spy.ShapeDef method) (genome_spy.Size method) (genome_spy.StringDatumDef method) (genome_spy.Stroke method) (genome_spy.StrokeOpacity method) (genome_spy.StrokeWidth method) (genome_spy.Text method) (genome_spy.TextDef method) (genome_spy.Tooltip method) (genome_spy.TooltipDef method) (genome_spy.X method) (genome_spy.X2 method) (genome_spy.XOffset method) (genome_spy.Y method) (genome_spy.Y2 method) (genome_spy.YOffset method) ScaleConfig (class in genome_spy) ScaleGroupsData (class in genome_spy) ScaleInterpolate (class in genome_spy) ScaleInterpolateParams (class in genome_spy) scales() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) (in module genome_spy) ScaleType (class in genome_spy) scatter() (in module genome_spy.integrations.scanpy.pl) scheme() (genome_spy.Scale method) (genome_spy.ScaleConfig method) SchemeParams (class in genome_spy) score() (genome_spy.FilterScoredLabelsParams method) (genome_spy.TransformParams method) scrublet_score_distribution() (in module genome_spy.integrations.scanpy.pl) Search (class in genome_spy) search() (genome_spy.Encoding method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) SearchDef (class in genome_spy) SecondaryChromPosDef (class in genome_spy) SecondaryOffsetChannel (class in genome_spy) SecondaryOffsetDef (class in genome_spy) SecondaryPositionalChannel (class in genome_spy) segments() (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) select() (genome_spy.CategorySelectionParameterColor method) (genome_spy.CategorySelectionParameterFill method) (genome_spy.CategorySelectionParameterShape method) (genome_spy.CategorySelectionParameterStroke method) (genome_spy.CategorySelectionParameterX method) (genome_spy.CategorySelectionParameterY method) (genome_spy.GradientIntervalSelectionParameterColor method) (genome_spy.GradientIntervalSelectionParameterFill method) (genome_spy.GradientIntervalSelectionParameterStroke method) (genome_spy.IntervalSelectionParameter method) (genome_spy.PositionalIntervalSelectionParameter method) (genome_spy.RecordSelectionParameter method) (genome_spy.SelectionParameter method) selection_interval() (in module genome_spy) selection_mask() (in module genome_spy.integrations.scanpy) selection_point() (in module genome_spy) selectionActive() (genome_spy.expr class method) selectionBounds() (genome_spy.expr class method) selectionContains() (genome_spy.expr class method) SelectionDomainRef (class in genome_spy) SelectionExtent (class in genome_spy) SelectionFilterParams (class in genome_spy) SelectionInitIntervalMapping (class in genome_spy) selectionLabel() (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) SelectionParameter (class in genome_spy) SelectionPredicateDefinition (class in genome_spy) SelectionPredicateOperand (class in genome_spy) SelectionUnionTest (class in genome_spy) selectionValues() (genome_spy.expr class method) SemanticScore (class in genome_spy) semanticScore() (genome_spy.Encoding method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.StyleConfig method) semanticZoomFraction() (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.StyleConfig method) separator() (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.FlattenDelimitedParams method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.TransformParams method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) SeparatorProps (class in genome_spy) sequence() (genome_spy.AlignmentMismatchesParams method) (genome_spy.CrossData method) (genome_spy.Data method) (genome_spy.Generator method) (genome_spy.SequenceGenerator method) (genome_spy.TransformParams method) SequenceGenerator (class in genome_spy) SequenceParams (class in genome_spy) set() (genome_spy.SetIntersectionParams method) (genome_spy.TransformParams method) set_data() (genome_spy.JupyterChart method) set_dataset() (genome_spy.JupyterChart method) SetIntersectionParams (class in genome_spy) shadowBlur() (genome_spy.BrushConfig method) (genome_spy.MarkProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.RulerMarkConfig method) (genome_spy.StyleConfig method) (genome_spy.ViewBackground method) (genome_spy.ViewConfig method) shadowColor() (genome_spy.BrushConfig method) (genome_spy.MarkProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.RulerMarkConfig method) (genome_spy.StyleConfig method) (genome_spy.ViewBackground method) (genome_spy.ViewConfig method) shadowOffsetX() (genome_spy.BrushConfig method) (genome_spy.MarkProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.RulerMarkConfig method) (genome_spy.StyleConfig method) (genome_spy.ViewBackground method) (genome_spy.ViewConfig method) shadowOffsetY() (genome_spy.BrushConfig method) (genome_spy.MarkProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.RulerMarkConfig method) (genome_spy.StyleConfig method) (genome_spy.ViewBackground method) (genome_spy.ViewConfig method) shadowOpacity() (genome_spy.BrushConfig method) (genome_spy.MarkProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.RulerMarkConfig method) (genome_spy.StyleConfig method) (genome_spy.ViewBackground method) (genome_spy.ViewConfig method) Shape (class in genome_spy) shape() (genome_spy.Encoding method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RangeConfig method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.StyleConfig method) ShapeDef (class in genome_spy) show() (genome_spy.integrations.scanpy.pl.DotPlot method) (genome_spy.integrations.scanpy.pl.EmbeddingSummary method) (genome_spy.integrations.scanpy.pl.MatrixPlot method) siblingOrder() (genome_spy.DendrogramParams method) (genome_spy.SiblingOrderedDendrogramParams method) (genome_spy.TransformParams method) SiblingOrderedDendrogramParams (class in genome_spy) sim() (in module genome_spy.integrations.scanpy.pl) sin() (genome_spy.expr class method) SingleUrlSourceRef (class in genome_spy) Size (class in genome_spy) size() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.Contig method) (genome_spy.Encoding method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RangeConfig method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.SampleParams method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.TransformParams method) SizeDef (class in genome_spy) sizeMode() (genome_spy.LazyDataParams method) skipInvalidInput() (genome_spy.RegexExtractParams method) (genome_spy.TransformParams method) skipRegex() (genome_spy.RegexFoldParams method) (genome_spy.TransformParams method) slice() (genome_spy.expr class method) smoothstep() (genome_spy.expr class method) snap() (genome_spy.RulerConfig method) sort() (genome_spy.Angle method) (genome_spy.CollectParams method) (genome_spy.Color method) (genome_spy.Direction method) (genome_spy.Dx method) (genome_spy.Dy method) (genome_spy.expr class method) (genome_spy.FacetFieldDef method) (genome_spy.FacetIndex method) (genome_spy.Fill method) (genome_spy.FillOpacity method) (genome_spy.Key method) (genome_spy.Opacity method) (genome_spy.Sample method) (genome_spy.Search method) (genome_spy.SemanticScore method) (genome_spy.Shape method) (genome_spy.Size method) (genome_spy.StackParams method) (genome_spy.Stroke method) (genome_spy.StrokeOpacity method) (genome_spy.StrokeWidth method) (genome_spy.Text method) (genome_spy.Tooltip method) (genome_spy.TransformParams method) (genome_spy.UniqueId method) (genome_spy.WindowParams method) (genome_spy.X method) (genome_spy.X2 method) (genome_spy.X2Offset method) (genome_spy.XOffset method) (genome_spy.Y method) (genome_spy.Y2 method) (genome_spy.Y2Offset method) (genome_spy.YOffset method) SortOrder (class in genome_spy) source() (genome_spy.data.LazyNamespace method) (genome_spy.LookupSelfInput method) (genome_spy.RulerConfig method) (genome_spy.ViewportDomainRef method) spacing() (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.LegendConfig method) (genome_spy.PileupParams method) (genome_spy.StyleConfig method) (genome_spy.SurroundChart method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.TransformParams method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) span() (genome_spy.expr class method) spec (genome_spy.Chart property) (genome_spy.ConcatChart property) (genome_spy.FacetChart property) (genome_spy.HConcatChart property) (genome_spy.LayerChart property) (genome_spy.MultiscaleChart property) (genome_spy.SurroundChart property) (genome_spy.TopLevelSpec property) (genome_spy.VConcatChart property) spec() (genome_spy.CoreRootSpec method) (genome_spy.FacetSpec method) (genome_spy.SurroundSpec method) (genome_spy.ViewSpec method) split() (genome_spy.expr class method) (genome_spy.Expression method) splitlines() (genome_spy.Expression method) sqrt() (genome_spy.expr class method) squeeze() (genome_spy.MarkProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) StackParams (class in genome_spy) start() (genome_spy.AlignmentMismatchesParams method) (genome_spy.CoverageParams method) (genome_spy.FlattenCigarParams method) (genome_spy.FlattenCompressedExonsParams method) (genome_spy.PileupParams method) (genome_spy.SequenceParams method) (genome_spy.TransformParams method) startNotch() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) startswith() (genome_spy.Expression method) stem() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.MarkProps method) (genome_spy.StyleConfig method) Step (class in genome_spy) step() (genome_spy.Binding method) (genome_spy.BindRange method) (genome_spy.SequenceParams method) (genome_spy.Step method) (genome_spy.ViewConfig method) (in module genome_spy) stop() (genome_spy.SequenceParams method) stops() (genome_spy.CoreRootSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SurroundPlotSpec method) (genome_spy.ViewSpec method) StringDatumDef (class in genome_spy) StringFieldDef (class in genome_spy) strip() (genome_spy.Expression method) Stroke (class in genome_spy) stroke() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.BrushConfig method) (genome_spy.Encoding method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.RulerMarkConfig method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.ViewBackground method) (genome_spy.ViewConfig method) StrokeAlign (class in genome_spy) strokeAlign() (genome_spy.MarkProps method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) strokeCap() (genome_spy.MarkProps method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.TickConfig method) (genome_spy.TickProps method) strokeDash() (genome_spy.MarkProps method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.RulerMarkConfig method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.TickConfig method) (genome_spy.TickProps method) strokeDashOffset() (genome_spy.MarkProps method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.TickConfig method) (genome_spy.TickProps method) StrokeOpacity (class in genome_spy) strokeOpacity() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.BrushConfig method) (genome_spy.Encoding method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.ViewBackground method) (genome_spy.ViewConfig method) StrokeWidth (class in genome_spy) strokeWidth() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.BrushConfig method) (genome_spy.Encoding method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.RulerMarkConfig method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.ViewBackground method) (genome_spy.ViewConfig method) strokeZindex() (genome_spy.ViewBackground method) (genome_spy.ViewConfig method) style() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.BrushConfig method) (genome_spy.FacetHeader method) (genome_spy.GenomeAxis method) (genome_spy.GenomeSpyConfig method) (genome_spy.integrations.scanpy.pl.DotPlot method) (genome_spy.integrations.scanpy.pl.EmbeddingSummary method) (genome_spy.integrations.scanpy.pl.MatrixPlot method) (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkConfig method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.TickConfig method) (genome_spy.TickProps method) (genome_spy.Title method) (genome_spy.TitleConfig method) (genome_spy.ViewBackground method) StyleConfig (class in genome_spy) substring() (genome_spy.expr class method) subtitle() (genome_spy.StyleConfig method) (genome_spy.Title method) (genome_spy.TitleConfig method) subtitleColor() (genome_spy.StyleConfig method) (genome_spy.Title method) (genome_spy.TitleConfig method) subtitleFont() (genome_spy.StyleConfig method) (genome_spy.Title method) (genome_spy.TitleConfig method) subtitleFontSize() (genome_spy.StyleConfig method) (genome_spy.Title method) (genome_spy.TitleConfig method) subtitleFontStyle() (genome_spy.StyleConfig method) (genome_spy.Title method) (genome_spy.TitleConfig method) subtitleFontWeight() (genome_spy.StyleConfig method) (genome_spy.Title method) (genome_spy.TitleConfig method) subtitlePadding() (genome_spy.StyleConfig method) (genome_spy.Title method) (genome_spy.TitleConfig method) surround() (genome_spy.CoreRootSpec method) (genome_spy.SurroundChart method) (genome_spy.SurroundSpec method) (genome_spy.ViewSpec method) (in module genome_spy) SurroundChart (class in genome_spy) SurroundPlotSpec (class in genome_spy) SurroundSide (class in genome_spy) SurroundSides (class in genome_spy) SurroundSideSpec (class in genome_spy) SurroundSpec (class in genome_spy) swap_axes() (genome_spy.integrations.scanpy.pl.DotPlot method) (genome_spy.integrations.scanpy.pl.MatrixPlot method) swapcase() (genome_spy.Expression method) symbolBaseFillColor() (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) symbolBaseStrokeColor() (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) symbolFillColor() (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) symbolOffset() (genome_spy.LegendConfig method) (genome_spy.PackLegendLabelsParams method) (genome_spy.StyleConfig method) (genome_spy.TransformParams method) symbolOpacity() (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) symbolSize() (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.PackLegendLabelsParams method) (genome_spy.StyleConfig method) (genome_spy.TransformParams method) symbolStrokeColor() (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) symbolStrokeWidth() (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.PackLegendLabelsParams method) (genome_spy.StyleConfig method) (genome_spy.TransformParams method) symbolType() (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) T tabix() (genome_spy.data.LazyNamespace method) TabixTsvData (class in genome_spy) tags() (genome_spy.BamData method) (genome_spy.LazyDataParams method) tan() (genome_spy.expr class method) template() (genome_spy.IndexUrlSourceRef method) (genome_spy.IndexUrlTemplate method) (genome_spy.MultiUrlSourceRef method) (genome_spy.SingleUrlSourceRef method) (genome_spy.TemplateImport method) (genome_spy.UrlSourceRef method) (genome_spy.UrlTemplate method) TemplateImport (class in genome_spy) templates() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) test() (genome_spy.ConditionalMarkPropExprDefType method) (genome_spy.ConditionalMarkPropExprDefTypeForShape method) (genome_spy.ConditionalMarkPropFieldDefType method) (genome_spy.ConditionalMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalScaleDatumDef method) (genome_spy.ConditionalTestMarkPropExprDefType method) (genome_spy.ConditionalTestMarkPropExprDefTypeForShape method) (genome_spy.ConditionalTestMarkPropFieldDefType method) (genome_spy.ConditionalTestMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalTestScaleDatumDef method) (genome_spy.ConditionalTestValueDefNumberExprRef method) (genome_spy.ConditionalTestValueDefStringNullExprRef method) (genome_spy.ConditionalValueDefNumberExprRef method) (genome_spy.ConditionalValueDefStringNullExprRef method) (genome_spy.expr class method) (genome_spy.OrderCondition method) Text (class in genome_spy) text() (genome_spy.Encoding method) (genome_spy.GenomeSpyConfig method) (genome_spy.MarkProps method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.Title method) TextConfig (class in genome_spy) TextDef (class in genome_spy) TextProps (class in genome_spy) theme() (genome_spy.CoreRootSpec method) thickness() (genome_spy.MarkProps method) (genome_spy.StyleConfig method) (genome_spy.TickConfig method) (genome_spy.TickProps method) tick() (genome_spy.GenomeSpyConfig method) tickCap() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) tickColor() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) TickConfig (class in genome_spy) tickCount() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) tickDash() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) tickDashOffset() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) tickMinStep() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) TickProps (class in genome_spy) ticks() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) tickSize() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) tickStep() (genome_spy.expr class method) tickWidth() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) timeseries() (in module genome_spy.integrations.scanpy.pl) timeseries_as_heatmap() (in module genome_spy.integrations.scanpy.pl) timeseries_subplot() (in module genome_spy.integrations.scanpy.pl) Title (class in genome_spy) title() (genome_spy.Angle method) (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.Chart method) (genome_spy.ChromPosDef method) (genome_spy.Color method) (genome_spy.ColorDef method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.ConditionalMarkPropExprDefType method) (genome_spy.ConditionalMarkPropExprDefTypeForShape method) (genome_spy.ConditionalMarkPropFieldDefType method) (genome_spy.ConditionalMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropExprDefType method) (genome_spy.ConditionalParameterMarkPropExprDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropFieldDefType method) (genome_spy.ConditionalParameterMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterScaleDatumDef method) (genome_spy.ConditionalParameterValueDefNumberExprRef method) (genome_spy.ConditionalParameterValueDefStringNullExprRef method) (genome_spy.ConditionalScaleDatumDef method) (genome_spy.ConditionalTestMarkPropExprDefType method) (genome_spy.ConditionalTestMarkPropExprDefTypeForShape method) (genome_spy.ConditionalTestMarkPropFieldDefType method) (genome_spy.ConditionalTestMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalTestScaleDatumDef method) (genome_spy.ConditionalTestValueDefNumberExprRef method) (genome_spy.ConditionalTestValueDefStringNullExprRef method) (genome_spy.ConditionalValueDefNumberExprRef method) (genome_spy.ConditionalValueDefStringNullExprRef method) (genome_spy.CoreRootSpec method) (genome_spy.Direction method) (genome_spy.DirectionDef method) (genome_spy.Dx method) (genome_spy.Dy method) (genome_spy.ExprDef method) (genome_spy.Expression method) (genome_spy.FacetChart method) (genome_spy.FacetFieldDef method) (genome_spy.FacetIndex method) (genome_spy.FacetSpec method) (genome_spy.FieldDefWithoutScale method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeForShapeStringNull method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeNumber method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeStringNull method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefNumber method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefStringNull method) (genome_spy.Fill method) (genome_spy.FillOpacity method) (genome_spy.GenomeAxis method) (genome_spy.GenomeSpyConfig method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.Key method) (genome_spy.KeyDef method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.MarkPropDefNumber method) (genome_spy.MarkPropDefStringNull method) (genome_spy.MarkPropDefStringNullTypeForShape method) (genome_spy.MarkPropExprDef method) (genome_spy.MarkPropExprDefType method) (genome_spy.MarkPropExprDefTypeForShape method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.NumericMarkPropDef method) (genome_spy.NumericValueDef method) (genome_spy.OffsetDef method) (genome_spy.Opacity method) (genome_spy.Position2Def method) (genome_spy.PositionDatumDef method) (genome_spy.PositionDef method) (genome_spy.PositionExprDef method) (genome_spy.PositionFieldDef method) (genome_spy.PositionValueDef method) (genome_spy.Sample method) (genome_spy.Search method) (genome_spy.SearchDef method) (genome_spy.SecondaryChromPosDef method) (genome_spy.SecondaryOffsetDef method) (genome_spy.SemanticScore method) (genome_spy.Shape method) (genome_spy.ShapeDef method) (genome_spy.Size method) (genome_spy.StringDatumDef method) (genome_spy.StringFieldDef method) (genome_spy.Stroke method) (genome_spy.StrokeOpacity method) (genome_spy.StrokeWidth method) (genome_spy.StyleConfig method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.Text method) (genome_spy.TextDef method) (genome_spy.Tooltip method) (genome_spy.TooltipDef method) (genome_spy.UniqueId method) (genome_spy.UnitSpec method) (genome_spy.ValueDefArrowDirection method) (genome_spy.ValueDefNumber method) (genome_spy.ValueDefString method) (genome_spy.ValueDefWithConditionNumberType method) (genome_spy.ValueDefWithConditionStringNullType method) (genome_spy.ValueDefWithConditionStringNullTypeForShape method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) (genome_spy.X method) (genome_spy.X2 method) (genome_spy.X2Offset method) (genome_spy.XOffset method) (genome_spy.Y method) (genome_spy.Y2 method) (genome_spy.Y2Offset method) (genome_spy.YOffset method) (in module genome_spy) TitleAnchor (class in genome_spy) titleColor() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) TitleConfig (class in genome_spy) titleFit() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) titleFont() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) titleFontSize() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) titleFontStyle() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) titleFontWeight() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) TitleFrame (class in genome_spy) titleLimit() (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) titleOpacity() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.StyleConfig method) TitleOrient (class in genome_spy) titleOrient() (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) titlePadding() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.GenomeAxis method) (genome_spy.LegendConfig method) (genome_spy.StyleConfig method) to_arrow_ipc() (in module genome_spy) to_chart() (genome_spy.integrations.scanpy.pl.DotPlot method) (genome_spy.integrations.scanpy.pl.EmbeddingSummary method) (genome_spy.integrations.scanpy.pl.MatrixPlot method) to_dict() (genome_spy.AggregateOp method) (genome_spy.AggregateParams method) (genome_spy.Align method) (genome_spy.AlignmentMismatchesParams method) (genome_spy.Angle method) (genome_spy.ArrowConfig method) (genome_spy.ArrowDirection method) (genome_spy.ArrowProps method) (genome_spy.ArrowRelativeSize method) (genome_spy.ArrowSize method) (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.AxisGenomeData method) (genome_spy.AxisLabelLayoutParams method) (genome_spy.AxisOrient method) (genome_spy.AxisPlacement method) (genome_spy.AxisTicksData method) (genome_spy.BamData method) (genome_spy.Baseline method) (genome_spy.BedDataFormat method) (genome_spy.BedpeDataFormat method) (genome_spy.BigBedData method) (genome_spy.BigWigData method) (genome_spy.BindCheckbox method) (genome_spy.Binding method) (genome_spy.BindInput method) (genome_spy.BindRadioSelect method) (genome_spy.BindRange method) (genome_spy.BranchParams method) (genome_spy.BrushConfig method) (genome_spy.BuiltInThemeName method) (genome_spy.CategorySelectionChannel method) (genome_spy.CategorySelectionParameterColor method) (genome_spy.CategorySelectionParameterFill method) (genome_spy.CategorySelectionParameterShape method) (genome_spy.CategorySelectionParameterStroke method) (genome_spy.CategorySelectionParameterX method) (genome_spy.CategorySelectionParameterY method) (genome_spy.ChannelWithScale method) (genome_spy.Chart method) (genome_spy.ChromosomalLocus method) (genome_spy.ChromPosDef method) (genome_spy.CollectParams method) (genome_spy.Color method) (genome_spy.ColorDef method) (genome_spy.ColorSchemeConfig method) (genome_spy.CompareParams method) (genome_spy.ComplexDomain method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.ConditionalMarkPropExprDefType method) (genome_spy.ConditionalMarkPropExprDefTypeForShape method) (genome_spy.ConditionalMarkPropFieldDefType method) (genome_spy.ConditionalMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropExprDefType method) (genome_spy.ConditionalParameterMarkPropExprDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropFieldDefType method) (genome_spy.ConditionalParameterMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterScaleDatumDef method) (genome_spy.ConditionalParameterValueDefNumberExprRef method) (genome_spy.ConditionalParameterValueDefStringNullExprRef method) (genome_spy.ConditionalScaleDatumDef method) (genome_spy.ConditionalTestMarkPropExprDefType method) (genome_spy.ConditionalTestMarkPropExprDefTypeForShape method) (genome_spy.ConditionalTestMarkPropFieldDefType method) (genome_spy.ConditionalTestMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalTestScaleDatumDef method) (genome_spy.ConditionalTestValueDefNumberExprRef method) (genome_spy.ConditionalTestValueDefStringNullExprRef method) (genome_spy.ConditionalValueDefNumberExprRef method) (genome_spy.ConditionalValueDefStringNullExprRef method) (genome_spy.Contig method) (genome_spy.CoordinateLookupInput method) (genome_spy.CoordinateLookupParams method) (genome_spy.CoreRootSpec method) (genome_spy.CoverageParams method) (genome_spy.CrossData method) (genome_spy.CrossInput method) (genome_spy.CrossParams method) (genome_spy.CsvDataFormat method) (genome_spy.Data method) (genome_spy.DataFormat method) (genome_spy.DataSource method) (genome_spy.DebouncedExprParameter method) (genome_spy.DendrogramParams method) (genome_spy.Direction method) (genome_spy.DirectionDef method) (genome_spy.Displace1DParams method) (genome_spy.Displace2DParams method) (genome_spy.DomainValue method) (genome_spy.DomainValueArray method) (genome_spy.DomEventType method) (genome_spy.DsvDataFormat method) (genome_spy.Dx method) (genome_spy.Dy method) (genome_spy.DynamicCallbackData method) (genome_spy.DynamicOpacity method) (genome_spy.Encoding method) (genome_spy.EventConfig method) (genome_spy.ExplicitlyOrderedDendrogramParams method) (genome_spy.expr method) (genome_spy.ExprDef method) (genome_spy.Expression method) (genome_spy.ExprFilterParams method) (genome_spy.ExprParameter method) (genome_spy.ExprRef method) (genome_spy.FacetChart method) (genome_spy.FacetFieldDef method) (genome_spy.FacetHeader method) (genome_spy.FacetIndex method) (genome_spy.FacetMapping method) (genome_spy.FacetSpacing method) (genome_spy.FacetSpec method) (genome_spy.FadedMultiscaleStops method) (genome_spy.Field method) (genome_spy.FieldDefWithoutScale method) (genome_spy.FieldName method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeForShapeStringNull method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeNumber method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeStringNull method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefNumber method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefStringNull method) (genome_spy.FigWigData method) (genome_spy.Fill method) (genome_spy.FillOpacity method) (genome_spy.FilterParams method) (genome_spy.FilterScoredLabelsParams method) (genome_spy.FlattenCigarParams method) (genome_spy.FlattenCompressedExonsParams method) (genome_spy.FlattenDelimitedParams method) (genome_spy.FlattenParams method) (genome_spy.FlattenSequenceParams method) (genome_spy.FontStyle method) (genome_spy.FontWeight method) (genome_spy.FormulaParams method) (genome_spy.Generator method) (genome_spy.GenomeAxis method) (genome_spy.GenomeConfig method) (genome_spy.GenomeConfigBase method) (genome_spy.GenomeDefinition method) (genome_spy.GenomeSpyConfig method) (genome_spy.GenomeSpySchema method) (genome_spy.Gff3Data method) (genome_spy.GradientIntervalSelectionParameterColor method) (genome_spy.GradientIntervalSelectionParameterFill method) (genome_spy.GradientIntervalSelectionParameterStroke method) (genome_spy.HandledTooltip method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.IdentifierParams method) (genome_spy.ImportedView method) (genome_spy.ImportSpec method) (genome_spy.IndexDendrogramParams method) (genome_spy.IndexedFastaData method) (genome_spy.IndexUrlSourceRef method) (genome_spy.IndexUrlTemplate method) (genome_spy.InlineData method) (genome_spy.InlineDataset method) (genome_spy.InlineGenomeConfig method) (genome_spy.InlineGenomeDefinition method) (genome_spy.InlineLocusAssembly method) (genome_spy.InteractionEventType method) (genome_spy.IntervalSelectionParameter method) (genome_spy.JsonDataFormat method) (genome_spy.Key method) (genome_spy.KeyDef method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.LazyData method) (genome_spy.LazyDataParams method) (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.LegendDirection method) (genome_spy.LegendLayout method) (genome_spy.LegendOrient method) (genome_spy.LegendRegionAnchor method) (genome_spy.LegendRegionLayout method) (genome_spy.LegendResolutionBehavior method) (genome_spy.LegendTitleOrient method) (genome_spy.LerpTransition method) (genome_spy.LinearizeGenomicCoordinateParams method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.LookupParams method) (genome_spy.LookupSelfInput method) (genome_spy.MarkConfig method) (genome_spy.MarkPropDefNumber method) (genome_spy.MarkPropDefStringNull method) (genome_spy.MarkPropDefStringNullTypeForShape method) (genome_spy.MarkPropExprDef method) (genome_spy.MarkPropExprDefType method) (genome_spy.MarkPropExprDefTypeForShape method) (genome_spy.MarkProps method) (genome_spy.MarkType method) (genome_spy.MeasureTextParams method) (genome_spy.MergeFacetsParams method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.MultiscaleStops method) (genome_spy.MultiscaleStopsDef method) (genome_spy.MultiUrlSourceRef method) (genome_spy.NamedData method) (genome_spy.NamedGenomeConfig method) (genome_spy.NamedSelectionPredicateRef method) (genome_spy.NumericDomain method) (genome_spy.NumericMarkPropDef method) (genome_spy.NumericStopDef method) (genome_spy.NumericValueDef method) (genome_spy.OffsetChannel method) (genome_spy.OffsetDef method) (genome_spy.Opacity method) (genome_spy.Order method) (genome_spy.OrderCondition method) (genome_spy.OrderDef method) (genome_spy.OtherDataFormat method) (genome_spy.OverhangConfig method) (genome_spy.PackLegendLabelsParams method) (genome_spy.PaddingConfig method) (genome_spy.Paddings method) (genome_spy.Parameter method) (genome_spy.ParameterPredicate method) (genome_spy.ParamTransition method) (genome_spy.Parse method) (genome_spy.ParseValue method) (genome_spy.PileupParams method) (genome_spy.PlainExprParameter method) (genome_spy.PlainValueParameter method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.Position2Def method) (genome_spy.PositionalChannel method) (genome_spy.PositionalIntervalSelectionParameter method) (genome_spy.PositionDatumDef method) (genome_spy.PositionDef method) (genome_spy.PositionExprDef method) (genome_spy.PositionFieldDef method) (genome_spy.PositionValueDef method) (genome_spy.PrimaryPositionalChannel method) (genome_spy.ProjectParams method) (genome_spy.RangeConfig method) (genome_spy.RecordSelectionParameter method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.RegexExtractParams method) (genome_spy.RegexFoldParams method) (genome_spy.ResolutionBehavior method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.Root method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.RulerChannelValue method) (genome_spy.RulerClear method) (genome_spy.RulerConfig method) (genome_spy.RulerDisplay method) (genome_spy.RulerEventConfig method) (genome_spy.RulerEventType method) (genome_spy.RulerExtent method) (genome_spy.RulerInitMapping method) (genome_spy.RulerMarkConfig method) (genome_spy.RulerParameter method) (genome_spy.RulerSnap method) (genome_spy.RulerSource method) (genome_spy.Sample method) (genome_spy.SampleParams method) (genome_spy.Scalar method) (genome_spy.ScalarDomain method) (genome_spy.Scale method) (genome_spy.ScaleConfig method) (genome_spy.ScaleGroupsData method) (genome_spy.ScaleInterpolate method) (genome_spy.ScaleInterpolateParams method) (genome_spy.ScaleType method) (genome_spy.SchemeParams method) (genome_spy.Search method) (genome_spy.SearchDef method) (genome_spy.SecondaryChromPosDef method) (genome_spy.SecondaryOffsetChannel method) (genome_spy.SecondaryOffsetDef method) (genome_spy.SecondaryPositionalChannel method) (genome_spy.SelectionDomainRef method) (genome_spy.SelectionExtent method) (genome_spy.SelectionFilterParams method) (genome_spy.SelectionInitIntervalMapping method) (genome_spy.SelectionParameter method) (genome_spy.SelectionPredicateDefinition method) (genome_spy.SelectionPredicateOperand method) (genome_spy.SelectionUnionTest method) (genome_spy.SemanticScore method) (genome_spy.SeparatorProps method) (genome_spy.SequenceGenerator method) (genome_spy.SequenceParams method) (genome_spy.SetIntersectionParams method) (genome_spy.Shape method) (genome_spy.ShapeDef method) (genome_spy.SiblingOrderedDendrogramParams method) (genome_spy.SingleUrlSourceRef method) (genome_spy.Size method) (genome_spy.SizeDef method) (genome_spy.SortOrder method) (genome_spy.StackParams method) (genome_spy.Step method) (genome_spy.StringDatumDef method) (genome_spy.StringFieldDef method) (genome_spy.Stroke method) (genome_spy.StrokeAlign method) (genome_spy.StrokeOpacity method) (genome_spy.StrokeWidth method) (genome_spy.StyleConfig method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSides method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.TabixTsvData method) (genome_spy.TemplateImport method) (genome_spy.Text method) (genome_spy.TextConfig method) (genome_spy.TextDef method) (genome_spy.TextProps method) (genome_spy.TickConfig method) (genome_spy.TickProps method) (genome_spy.Title method) (genome_spy.TitleAnchor method) (genome_spy.TitleConfig method) (genome_spy.TitleFrame method) (genome_spy.TitleOrient method) (genome_spy.Tooltip method) (genome_spy.TooltipDef method) (genome_spy.TopLevelSpec method) (genome_spy.TransformOutput method) (genome_spy.TransformParams method) (genome_spy.TransitionedExprParameter method) (genome_spy.TransitionedMultiscaleStops method) (genome_spy.TransitionedValueParameter method) (genome_spy.TruncateTextParams method) (genome_spy.Type method) (genome_spy.TypeForShape method) (genome_spy.UniqueId method) (genome_spy.UnitSpec method) (genome_spy.UrlData method) (genome_spy.UrlGenomeConfig method) (genome_spy.UrlGenomeDefinition method) (genome_spy.UrlImport method) (genome_spy.UrlList method) (genome_spy.UrlSourceRef method) (genome_spy.UrlTemplate method) (genome_spy.ValueDefArrowDirection method) (genome_spy.ValueDefNumber method) (genome_spy.ValueDefString method) (genome_spy.ValueDefWithConditionNumberType method) (genome_spy.ValueDefWithConditionStringNullType method) (genome_spy.ValueDefWithConditionStringNullTypeForShape method) (genome_spy.ValueParameter method) (genome_spy.ValuesParams method) (genome_spy.VariableParameter method) (genome_spy.VcfData method) (genome_spy.VcfDataFormat method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewBackground method) (genome_spy.ViewConfig method) (genome_spy.ViewOpacityDef method) (genome_spy.ViewportDomainRef method) (genome_spy.ViewportSizeDef method) (genome_spy.ViewSpec method) (genome_spy.WigDataFormat method) (genome_spy.WindowOnlyOp method) (genome_spy.WindowOp method) (genome_spy.WindowParams method) (genome_spy.X method) (genome_spy.X2 method) (genome_spy.X2Offset method) (genome_spy.XOffset method) (genome_spy.Y method) (genome_spy.Y2 method) (genome_spy.Y2Offset method) (genome_spy.YOffset method) (genome_spy.ZoomParams method) to_html() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) to_json() (genome_spy.AggregateOp method) (genome_spy.AggregateParams method) (genome_spy.Align method) (genome_spy.AlignmentMismatchesParams method) (genome_spy.ArrowConfig method) (genome_spy.ArrowDirection method) (genome_spy.ArrowProps method) (genome_spy.ArrowRelativeSize method) (genome_spy.ArrowSize method) (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.AxisGenomeData method) (genome_spy.AxisLabelLayoutParams method) (genome_spy.AxisOrient method) (genome_spy.AxisPlacement method) (genome_spy.AxisTicksData method) (genome_spy.BamData method) (genome_spy.Baseline method) (genome_spy.BedDataFormat method) (genome_spy.BedpeDataFormat method) (genome_spy.BigBedData method) (genome_spy.BigWigData method) (genome_spy.BindCheckbox method) (genome_spy.Binding method) (genome_spy.BindInput method) (genome_spy.BindRadioSelect method) (genome_spy.BindRange method) (genome_spy.BranchParams method) (genome_spy.BrushConfig method) (genome_spy.BuiltInThemeName method) (genome_spy.CategorySelectionChannel method) (genome_spy.CategorySelectionParameterColor method) (genome_spy.CategorySelectionParameterFill method) (genome_spy.CategorySelectionParameterShape method) (genome_spy.CategorySelectionParameterStroke method) (genome_spy.CategorySelectionParameterX method) (genome_spy.CategorySelectionParameterY method) (genome_spy.ChannelWithScale method) (genome_spy.Chart method) (genome_spy.ChromosomalLocus method) (genome_spy.ChromPosDef method) (genome_spy.CollectParams method) (genome_spy.ColorDef method) (genome_spy.ColorSchemeConfig method) (genome_spy.CompareParams method) (genome_spy.ComplexDomain method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.ConditionalMarkPropExprDefType method) (genome_spy.ConditionalMarkPropExprDefTypeForShape method) (genome_spy.ConditionalMarkPropFieldDefType method) (genome_spy.ConditionalMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropExprDefType method) (genome_spy.ConditionalParameterMarkPropExprDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropFieldDefType method) (genome_spy.ConditionalParameterMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterScaleDatumDef method) (genome_spy.ConditionalParameterValueDefNumberExprRef method) (genome_spy.ConditionalParameterValueDefStringNullExprRef method) (genome_spy.ConditionalScaleDatumDef method) (genome_spy.ConditionalTestMarkPropExprDefType method) (genome_spy.ConditionalTestMarkPropExprDefTypeForShape method) (genome_spy.ConditionalTestMarkPropFieldDefType method) (genome_spy.ConditionalTestMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalTestScaleDatumDef method) (genome_spy.ConditionalTestValueDefNumberExprRef method) (genome_spy.ConditionalTestValueDefStringNullExprRef method) (genome_spy.ConditionalValueDefNumberExprRef method) (genome_spy.ConditionalValueDefStringNullExprRef method) (genome_spy.Contig method) (genome_spy.CoordinateLookupInput method) (genome_spy.CoordinateLookupParams method) (genome_spy.CoreRootSpec method) (genome_spy.CoverageParams method) (genome_spy.CrossData method) (genome_spy.CrossInput method) (genome_spy.CrossParams method) (genome_spy.CsvDataFormat method) (genome_spy.Data method) (genome_spy.DataFormat method) (genome_spy.DataSource method) (genome_spy.DebouncedExprParameter method) (genome_spy.DendrogramParams method) (genome_spy.DirectionDef method) (genome_spy.Displace1DParams method) (genome_spy.Displace2DParams method) (genome_spy.DomainValue method) (genome_spy.DomainValueArray method) (genome_spy.DomEventType method) (genome_spy.DsvDataFormat method) (genome_spy.DynamicCallbackData method) (genome_spy.DynamicOpacity method) (genome_spy.Encoding method) (genome_spy.EventConfig method) (genome_spy.ExplicitlyOrderedDendrogramParams method) (genome_spy.expr method) (genome_spy.ExprDef method) (genome_spy.ExprFilterParams method) (genome_spy.ExprParameter method) (genome_spy.ExprRef method) (genome_spy.FacetChart method) (genome_spy.FacetFieldDef method) (genome_spy.FacetHeader method) (genome_spy.FacetMapping method) (genome_spy.FacetSpacing method) (genome_spy.FacetSpec method) (genome_spy.FadedMultiscaleStops method) (genome_spy.Field method) (genome_spy.FieldDefWithoutScale method) (genome_spy.FieldName method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeForShapeStringNull method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeNumber method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeStringNull method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefNumber method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefStringNull method) (genome_spy.FigWigData method) (genome_spy.FilterParams method) (genome_spy.FilterScoredLabelsParams method) (genome_spy.FlattenCigarParams method) (genome_spy.FlattenCompressedExonsParams method) (genome_spy.FlattenDelimitedParams method) (genome_spy.FlattenParams method) (genome_spy.FlattenSequenceParams method) (genome_spy.FontStyle method) (genome_spy.FontWeight method) (genome_spy.FormulaParams method) (genome_spy.Generator method) (genome_spy.GenomeAxis method) (genome_spy.GenomeConfig method) (genome_spy.GenomeConfigBase method) (genome_spy.GenomeDefinition method) (genome_spy.GenomeSpyConfig method) (genome_spy.GenomeSpySchema method) (genome_spy.Gff3Data method) (genome_spy.GradientIntervalSelectionParameterColor method) (genome_spy.GradientIntervalSelectionParameterFill method) (genome_spy.GradientIntervalSelectionParameterStroke method) (genome_spy.HandledTooltip method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.IdentifierParams method) (genome_spy.ImportedView method) (genome_spy.ImportSpec method) (genome_spy.IndexDendrogramParams method) (genome_spy.IndexedFastaData method) (genome_spy.IndexUrlSourceRef method) (genome_spy.IndexUrlTemplate method) (genome_spy.InlineData method) (genome_spy.InlineDataset method) (genome_spy.InlineGenomeConfig method) (genome_spy.InlineGenomeDefinition method) (genome_spy.InlineLocusAssembly method) (genome_spy.InteractionEventType method) (genome_spy.IntervalSelectionParameter method) (genome_spy.JsonDataFormat method) (genome_spy.KeyDef method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.LazyData method) (genome_spy.LazyDataParams method) (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.LegendDirection method) (genome_spy.LegendLayout method) (genome_spy.LegendOrient method) (genome_spy.LegendRegionAnchor method) (genome_spy.LegendRegionLayout method) (genome_spy.LegendResolutionBehavior method) (genome_spy.LegendTitleOrient method) (genome_spy.LerpTransition method) (genome_spy.LinearizeGenomicCoordinateParams method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.LookupParams method) (genome_spy.LookupSelfInput method) (genome_spy.MarkConfig method) (genome_spy.MarkPropDefNumber method) (genome_spy.MarkPropDefStringNull method) (genome_spy.MarkPropDefStringNullTypeForShape method) (genome_spy.MarkPropExprDef method) (genome_spy.MarkPropExprDefType method) (genome_spy.MarkPropExprDefTypeForShape method) (genome_spy.MarkProps method) (genome_spy.MarkType method) (genome_spy.MeasureTextParams method) (genome_spy.MergeFacetsParams method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.MultiscaleStops method) (genome_spy.MultiscaleStopsDef method) (genome_spy.MultiUrlSourceRef method) (genome_spy.NamedData method) (genome_spy.NamedGenomeConfig method) (genome_spy.NamedSelectionPredicateRef method) (genome_spy.NumericDomain method) (genome_spy.NumericMarkPropDef method) (genome_spy.NumericStopDef method) (genome_spy.NumericValueDef method) (genome_spy.OffsetChannel method) (genome_spy.OffsetDef method) (genome_spy.OrderCondition method) (genome_spy.OrderDef method) (genome_spy.OtherDataFormat method) (genome_spy.OverhangConfig method) (genome_spy.PackLegendLabelsParams method) (genome_spy.PaddingConfig method) (genome_spy.Paddings method) (genome_spy.Parameter method) (genome_spy.ParameterPredicate method) (genome_spy.ParamTransition method) (genome_spy.Parse method) (genome_spy.ParseValue method) (genome_spy.PileupParams method) (genome_spy.PlainExprParameter method) (genome_spy.PlainValueParameter method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.Position2Def method) (genome_spy.PositionalChannel method) (genome_spy.PositionalIntervalSelectionParameter method) (genome_spy.PositionDatumDef method) (genome_spy.PositionDef method) (genome_spy.PositionExprDef method) (genome_spy.PositionFieldDef method) (genome_spy.PositionValueDef method) (genome_spy.PrimaryPositionalChannel method) (genome_spy.ProjectParams method) (genome_spy.RangeConfig method) (genome_spy.RecordSelectionParameter method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.RegexExtractParams method) (genome_spy.RegexFoldParams method) (genome_spy.ResolutionBehavior method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.Root method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.RulerChannelValue method) (genome_spy.RulerClear method) (genome_spy.RulerConfig method) (genome_spy.RulerDisplay method) (genome_spy.RulerEventConfig method) (genome_spy.RulerEventType method) (genome_spy.RulerExtent method) (genome_spy.RulerInitMapping method) (genome_spy.RulerMarkConfig method) (genome_spy.RulerParameter method) (genome_spy.RulerSnap method) (genome_spy.RulerSource method) (genome_spy.SampleParams method) (genome_spy.Scalar method) (genome_spy.ScalarDomain method) (genome_spy.Scale method) (genome_spy.ScaleConfig method) (genome_spy.ScaleGroupsData method) (genome_spy.ScaleInterpolate method) (genome_spy.ScaleInterpolateParams method) (genome_spy.ScaleType method) (genome_spy.SchemeParams method) (genome_spy.SearchDef method) (genome_spy.SecondaryChromPosDef method) (genome_spy.SecondaryOffsetChannel method) (genome_spy.SecondaryOffsetDef method) (genome_spy.SecondaryPositionalChannel method) (genome_spy.SelectionDomainRef method) (genome_spy.SelectionExtent method) (genome_spy.SelectionFilterParams method) (genome_spy.SelectionInitIntervalMapping method) (genome_spy.SelectionParameter method) (genome_spy.SelectionPredicateDefinition method) (genome_spy.SelectionPredicateOperand method) (genome_spy.SelectionUnionTest method) (genome_spy.SeparatorProps method) (genome_spy.SequenceGenerator method) (genome_spy.SequenceParams method) (genome_spy.SetIntersectionParams method) (genome_spy.ShapeDef method) (genome_spy.SiblingOrderedDendrogramParams method) (genome_spy.SingleUrlSourceRef method) (genome_spy.SizeDef method) (genome_spy.SortOrder method) (genome_spy.StackParams method) (genome_spy.Step method) (genome_spy.StringDatumDef method) (genome_spy.StringFieldDef method) (genome_spy.StrokeAlign method) (genome_spy.StyleConfig method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSides method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.TabixTsvData method) (genome_spy.TemplateImport method) (genome_spy.TextConfig method) (genome_spy.TextDef method) (genome_spy.TextProps method) (genome_spy.TickConfig method) (genome_spy.TickProps method) (genome_spy.Title method) (genome_spy.TitleAnchor method) (genome_spy.TitleConfig method) (genome_spy.TitleFrame method) (genome_spy.TitleOrient method) (genome_spy.TooltipDef method) (genome_spy.TopLevelSpec method) (genome_spy.TransformOutput method) (genome_spy.TransformParams method) (genome_spy.TransitionedExprParameter method) (genome_spy.TransitionedMultiscaleStops method) (genome_spy.TransitionedValueParameter method) (genome_spy.TruncateTextParams method) (genome_spy.Type method) (genome_spy.TypeForShape method) (genome_spy.UnitSpec method) (genome_spy.UrlData method) (genome_spy.UrlGenomeConfig method) (genome_spy.UrlGenomeDefinition method) (genome_spy.UrlImport method) (genome_spy.UrlList method) (genome_spy.UrlSourceRef method) (genome_spy.UrlTemplate method) (genome_spy.ValueDefArrowDirection method) (genome_spy.ValueDefNumber method) (genome_spy.ValueDefString method) (genome_spy.ValueDefWithConditionNumberType method) (genome_spy.ValueDefWithConditionStringNullType method) (genome_spy.ValueDefWithConditionStringNullTypeForShape method) (genome_spy.ValueParameter method) (genome_spy.ValuesParams method) (genome_spy.VariableParameter method) (genome_spy.VcfData method) (genome_spy.VcfDataFormat method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewBackground method) (genome_spy.ViewConfig method) (genome_spy.ViewOpacityDef method) (genome_spy.ViewportDomainRef method) (genome_spy.ViewportSizeDef method) (genome_spy.ViewSpec method) (genome_spy.WigDataFormat method) (genome_spy.WindowOnlyOp method) (genome_spy.WindowOp method) (genome_spy.WindowParams method) (genome_spy.ZoomParams method) Tooltip (class in genome_spy) tooltip() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.Encoding method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkConfig method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.TickConfig method) (genome_spy.TickProps method) TooltipDef (class in genome_spy) top() (genome_spy.LegendLayout method) (genome_spy.OverhangConfig method) (genome_spy.PaddingConfig method) (genome_spy.Paddings method) (genome_spy.SurroundSides method) TopLevelSpec (class in genome_spy) tracks() (genome_spy.FigWigData method) (genome_spy.LazyDataParams method) tracksplot() (in module genome_spy.integrations.scanpy.pl) transform() (genome_spy.BranchParams method) (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoordinateLookupInput method) (genome_spy.CoreRootSpec method) (genome_spy.CrossInput method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.TopLevelSpec method) (genome_spy.TransformParams method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) transform_aggregate() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_alignment_mismatches() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_axis_label_layout() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_branch() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_calculate() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_collect() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_coordinate_lookup() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_coverage() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_cross() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_dendrogram() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_displace1d() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_displace2d() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_filter() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_filter_scored_labels() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_flatten() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_flatten_cigar() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_flatten_compressed_exons() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_flatten_delimited() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_flatten_sequence() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_formula() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_identifier() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_linearize_genomic_coordinate() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_lookup() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_measure_text() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_merge_facets() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_pack_legend_labels() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_pileup() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_project() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_regex_extract() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_regex_fold() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_sample() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_set_intersection() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_stack() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_truncate_text() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_values() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) transform_window() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) TransformOutput (class in genome_spy) TransformParams (class in genome_spy) transition() (genome_spy.ExprParameter method) (genome_spy.MultiscaleStops method) (genome_spy.MultiscaleStopsDef method) (genome_spy.TransitionedExprParameter method) (genome_spy.TransitionedMultiscaleStops method) (genome_spy.TransitionedValueParameter method) (genome_spy.ValueParameter method) (genome_spy.VariableParameter method) TransitionedExprParameter (class in genome_spy) TransitionedMultiscaleStops (class in genome_spy) TransitionedValueParameter (class in genome_spy) translate() (genome_spy.Expression method) trim() (genome_spy.expr class method) TruncateTextParams (class in genome_spy) tsne() (in module genome_spy.integrations.scanpy.pl) Type (class in genome_spy) type() (genome_spy.AggregateParams method) (genome_spy.AlignmentMismatchesParams method) (genome_spy.Angle method) (genome_spy.ArrowProps method) (genome_spy.AxisGenomeData method) (genome_spy.AxisLabelLayoutParams method) (genome_spy.AxisTicksData method) (genome_spy.BamData method) (genome_spy.BedDataFormat method) (genome_spy.BedpeDataFormat method) (genome_spy.BigBedData method) (genome_spy.BigWigData method) (genome_spy.BranchParams method) (genome_spy.ChromPosDef method) (genome_spy.CollectParams method) (genome_spy.Color method) (genome_spy.ColorDef method) (genome_spy.ConditionalMarkPropExprDefType method) (genome_spy.ConditionalMarkPropExprDefTypeForShape method) (genome_spy.ConditionalMarkPropFieldDefType method) (genome_spy.ConditionalMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropExprDefType method) (genome_spy.ConditionalParameterMarkPropExprDefTypeForShape method) (genome_spy.ConditionalParameterMarkPropFieldDefType method) (genome_spy.ConditionalParameterMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalParameterScaleDatumDef method) (genome_spy.ConditionalScaleDatumDef method) (genome_spy.ConditionalTestMarkPropExprDefType method) (genome_spy.ConditionalTestMarkPropExprDefTypeForShape method) (genome_spy.ConditionalTestMarkPropFieldDefType method) (genome_spy.ConditionalTestMarkPropFieldDefTypeForShape method) (genome_spy.ConditionalTestScaleDatumDef method) (genome_spy.CoordinateLookupParams method) (genome_spy.CoverageParams method) (genome_spy.CrossParams method) (genome_spy.CsvDataFormat method) (genome_spy.DataFormat method) (genome_spy.DendrogramParams method) (genome_spy.Direction method) (genome_spy.DirectionDef method) (genome_spy.Displace1DParams method) (genome_spy.Displace2DParams method) (genome_spy.DsvDataFormat method) (genome_spy.Dx method) (genome_spy.Dy method) (genome_spy.EventConfig method) (genome_spy.ExplicitlyOrderedDendrogramParams method) (genome_spy.ExprDef method) (genome_spy.ExprFilterParams method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeForShapeStringNull method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeNumber method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeStringNull method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefNumber method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefStringNull method) (genome_spy.FigWigData method) (genome_spy.Fill method) (genome_spy.FillOpacity method) (genome_spy.FilterParams method) (genome_spy.FilterScoredLabelsParams method) (genome_spy.FlattenCigarParams method) (genome_spy.FlattenCompressedExonsParams method) (genome_spy.FlattenDelimitedParams method) (genome_spy.FlattenParams method) (genome_spy.FlattenSequenceParams method) (genome_spy.FormulaParams method) (genome_spy.Gff3Data method) (genome_spy.IdentifierParams method) (genome_spy.IndexDendrogramParams method) (genome_spy.IndexedFastaData method) (genome_spy.JsonDataFormat method) (genome_spy.LazyDataParams method) (genome_spy.LerpTransition method) (genome_spy.LinearizeGenomicCoordinateParams method) (genome_spy.LinkProps method) (genome_spy.LookupParams method) (genome_spy.MarkPropDefNumber method) (genome_spy.MarkPropDefStringNull method) (genome_spy.MarkPropDefStringNullTypeForShape method) (genome_spy.MarkPropExprDef method) (genome_spy.MarkPropExprDefType method) (genome_spy.MarkPropExprDefTypeForShape method) (genome_spy.MarkProps method) (genome_spy.MeasureTextParams method) (genome_spy.MergeFacetsParams method) (genome_spy.NumericMarkPropDef method) (genome_spy.OffsetDef method) (genome_spy.Opacity method) (genome_spy.OtherDataFormat method) (genome_spy.PackLegendLabelsParams method) (genome_spy.ParamTransition method) (genome_spy.PileupParams method) (genome_spy.PointProps method) (genome_spy.Position2Def method) (genome_spy.PositionDatumDef method) (genome_spy.PositionDef method) (genome_spy.PositionExprDef method) (genome_spy.PositionFieldDef method) (genome_spy.ProjectParams method) (genome_spy.RectProps method) (genome_spy.RegexExtractParams method) (genome_spy.RegexFoldParams method) (genome_spy.RuleProps method) (genome_spy.RulerEventConfig method) (genome_spy.SampleParams method) (genome_spy.Scale method) (genome_spy.ScaleConfig method) (genome_spy.ScaleGroupsData method) (genome_spy.ScaleInterpolateParams method) (genome_spy.SecondaryOffsetDef method) (genome_spy.SelectionFilterParams method) (genome_spy.SemanticScore method) (genome_spy.SeparatorProps method) (genome_spy.SetIntersectionParams method) (genome_spy.Shape method) (genome_spy.ShapeDef method) (genome_spy.SiblingOrderedDendrogramParams method) (genome_spy.Size method) (genome_spy.StackParams method) (genome_spy.StringDatumDef method) (genome_spy.StringFieldDef method) (genome_spy.Stroke method) (genome_spy.StrokeOpacity method) (genome_spy.StrokeWidth method) (genome_spy.TabixTsvData method) (genome_spy.Text method) (genome_spy.TextDef method) (genome_spy.TextProps method) (genome_spy.TickProps method) (genome_spy.Tooltip method) (genome_spy.TooltipDef method) (genome_spy.TransformParams method) (genome_spy.TruncateTextParams method) (genome_spy.UrlList method) (genome_spy.UrlSourceRef method) (genome_spy.ValuesParams method) (genome_spy.VcfData method) (genome_spy.VcfDataFormat method) (genome_spy.WigDataFormat method) (genome_spy.WindowParams method) (genome_spy.X method) (genome_spy.X2 method) (genome_spy.X2Offset method) (genome_spy.XOffset method) (genome_spy.Y method) (genome_spy.Y2 method) (genome_spy.Y2Offset method) (genome_spy.YOffset method) TypeForShape (class in genome_spy) U umap() (in module genome_spy.integrations.scanpy.pl) UniqueId (class in genome_spy) uniqueId() (genome_spy.Encoding method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) UnitSpec (class in genome_spy) unitsPerPixel() (genome_spy.DynamicOpacity method) (genome_spy.ViewOpacityDef method) upper() (genome_spy.expr class method) (genome_spy.Expression method) url() (genome_spy.BamData method) (genome_spy.BigBedData method) (genome_spy.BigWigData method) (genome_spy.CrossData method) (genome_spy.Data method) (genome_spy.DataSource method) (genome_spy.FigWigData method) (genome_spy.GenomeConfig method) (genome_spy.GenomeDefinition method) (genome_spy.Gff3Data method) (genome_spy.IndexedFastaData method) (genome_spy.InlineLocusAssembly method) (genome_spy.LazyDataParams method) (genome_spy.NamedGenomeConfig method) (genome_spy.TabixTsvData method) (genome_spy.UrlData method) (genome_spy.UrlGenomeConfig method) (genome_spy.UrlGenomeDefinition method) (genome_spy.UrlImport method) (genome_spy.VcfData method) UrlData (class in genome_spy) UrlGenomeConfig (class in genome_spy) UrlGenomeDefinition (class in genome_spy) UrlImport (class in genome_spy) UrlList (class in genome_spy) urlsFromFile() (genome_spy.UrlList method) (genome_spy.UrlSourceRef method) UrlSourceRef (class in genome_spy) UrlTemplate (class in genome_spy) V validate() (genome_spy.AggregateOp class method) (genome_spy.AggregateParams class method) (genome_spy.Align class method) (genome_spy.AlignmentMismatchesParams class method) (genome_spy.ArrowConfig class method) (genome_spy.ArrowDirection class method) (genome_spy.ArrowProps class method) (genome_spy.ArrowRelativeSize class method) (genome_spy.ArrowSize class method) (genome_spy.Axis class method) (genome_spy.AxisConfig class method) (genome_spy.AxisGenomeData class method) (genome_spy.AxisLabelLayoutParams class method) (genome_spy.AxisOrient class method) (genome_spy.AxisPlacement class method) (genome_spy.AxisTicksData class method) (genome_spy.BamData class method) (genome_spy.Baseline class method) (genome_spy.BedDataFormat class method) (genome_spy.BedpeDataFormat class method) (genome_spy.BigBedData class method) (genome_spy.BigWigData class method) (genome_spy.BindCheckbox class method) (genome_spy.Binding class method) (genome_spy.BindInput class method) (genome_spy.BindRadioSelect class method) (genome_spy.BindRange class method) (genome_spy.BranchParams class method) (genome_spy.BrushConfig class method) (genome_spy.BuiltInThemeName class method) (genome_spy.CategorySelectionChannel class method) (genome_spy.CategorySelectionParameterColor class method) (genome_spy.CategorySelectionParameterFill class method) (genome_spy.CategorySelectionParameterShape class method) (genome_spy.CategorySelectionParameterStroke class method) (genome_spy.CategorySelectionParameterX class method) (genome_spy.CategorySelectionParameterY class method) (genome_spy.ChannelWithScale class method) (genome_spy.Chart class method) (genome_spy.ChromosomalLocus class method) (genome_spy.ChromPosDef class method) (genome_spy.CollectParams class method) (genome_spy.ColorDef class method) (genome_spy.ColorSchemeConfig class method) (genome_spy.CompareParams class method) (genome_spy.ComplexDomain class method) (genome_spy.ConcatChart class method) (genome_spy.ConcatSpec class method) (genome_spy.ConditionalMarkPropExprDefType class method) (genome_spy.ConditionalMarkPropExprDefTypeForShape class method) (genome_spy.ConditionalMarkPropFieldDefType class method) (genome_spy.ConditionalMarkPropFieldDefTypeForShape class method) (genome_spy.ConditionalParameterMarkPropExprDefType class method) (genome_spy.ConditionalParameterMarkPropExprDefTypeForShape class method) (genome_spy.ConditionalParameterMarkPropFieldDefType class method) (genome_spy.ConditionalParameterMarkPropFieldDefTypeForShape class method) (genome_spy.ConditionalParameterScaleDatumDef class method) (genome_spy.ConditionalParameterValueDefNumberExprRef class method) (genome_spy.ConditionalParameterValueDefStringNullExprRef class method) (genome_spy.ConditionalScaleDatumDef class method) (genome_spy.ConditionalTestMarkPropExprDefType class method) (genome_spy.ConditionalTestMarkPropExprDefTypeForShape class method) (genome_spy.ConditionalTestMarkPropFieldDefType class method) (genome_spy.ConditionalTestMarkPropFieldDefTypeForShape class method) (genome_spy.ConditionalTestScaleDatumDef class method) (genome_spy.ConditionalTestValueDefNumberExprRef class method) (genome_spy.ConditionalTestValueDefStringNullExprRef class method) (genome_spy.ConditionalValueDefNumberExprRef class method) (genome_spy.ConditionalValueDefStringNullExprRef class method) (genome_spy.Contig class method) (genome_spy.CoordinateLookupInput class method) (genome_spy.CoordinateLookupParams class method) (genome_spy.CoreRootSpec class method) (genome_spy.CoverageParams class method) (genome_spy.CrossData class method) (genome_spy.CrossInput class method) (genome_spy.CrossParams class method) (genome_spy.CsvDataFormat class method) (genome_spy.Data class method) (genome_spy.DataFormat class method) (genome_spy.DataSource class method) (genome_spy.DebouncedExprParameter class method) (genome_spy.DendrogramParams class method) (genome_spy.DirectionDef class method) (genome_spy.Displace1DParams class method) (genome_spy.Displace2DParams class method) (genome_spy.DomainValue class method) (genome_spy.DomainValueArray class method) (genome_spy.DomEventType class method) (genome_spy.DsvDataFormat class method) (genome_spy.DynamicCallbackData class method) (genome_spy.DynamicOpacity class method) (genome_spy.Encoding class method) (genome_spy.EventConfig class method) (genome_spy.ExplicitlyOrderedDendrogramParams class method) (genome_spy.expr class method) (genome_spy.ExprDef class method) (genome_spy.ExprFilterParams class method) (genome_spy.ExprParameter class method) (genome_spy.ExprRef class method) (genome_spy.FacetChart class method) (genome_spy.FacetFieldDef class method) (genome_spy.FacetHeader class method) (genome_spy.FacetMapping class method) (genome_spy.FacetSpacing class method) (genome_spy.FacetSpec class method) (genome_spy.FadedMultiscaleStops class method) (genome_spy.Field class method) (genome_spy.FieldDefWithoutScale class method) (genome_spy.FieldName class method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeForShapeStringNull class method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeNumber class method) (genome_spy.FieldOrDatumDefWithConditionMarkPropFieldDefTypeStringNull class method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefNumber class method) (genome_spy.FieldOrDatumDefWithConditionScaleDatumDefStringNull class method) (genome_spy.FigWigData class method) (genome_spy.FilterParams class method) (genome_spy.FilterScoredLabelsParams class method) (genome_spy.FlattenCigarParams class method) (genome_spy.FlattenCompressedExonsParams class method) (genome_spy.FlattenDelimitedParams class method) (genome_spy.FlattenParams class method) (genome_spy.FlattenSequenceParams class method) (genome_spy.FontStyle class method) (genome_spy.FontWeight class method) (genome_spy.FormulaParams class method) (genome_spy.Generator class method) (genome_spy.GenomeAxis class method) (genome_spy.GenomeConfig class method) (genome_spy.GenomeConfigBase class method) (genome_spy.GenomeDefinition class method) (genome_spy.GenomeSpyConfig class method) (genome_spy.GenomeSpySchema class method) (genome_spy.Gff3Data class method) (genome_spy.GradientIntervalSelectionParameterColor class method) (genome_spy.GradientIntervalSelectionParameterFill class method) (genome_spy.GradientIntervalSelectionParameterStroke class method) (genome_spy.HandledTooltip class method) (genome_spy.HConcatChart class method) (genome_spy.HConcatSpec class method) (genome_spy.IdentifierParams class method) (genome_spy.ImportedView class method) (genome_spy.ImportSpec class method) (genome_spy.IndexDendrogramParams class method) (genome_spy.IndexedFastaData class method) (genome_spy.IndexUrlSourceRef class method) (genome_spy.IndexUrlTemplate class method) (genome_spy.InlineData class method) (genome_spy.InlineDataset class method) (genome_spy.InlineGenomeConfig class method) (genome_spy.InlineGenomeDefinition class method) (genome_spy.InlineLocusAssembly class method) (genome_spy.InteractionEventType class method) (genome_spy.IntervalSelectionParameter class method) (genome_spy.JsonDataFormat class method) (genome_spy.KeyDef class method) (genome_spy.LayerChart class method) (genome_spy.LayerSpec class method) (genome_spy.LazyData class method) (genome_spy.LazyDataParams class method) (genome_spy.Legend class method) (genome_spy.LegendConfig class method) (genome_spy.LegendDirection class method) (genome_spy.LegendLayout class method) (genome_spy.LegendOrient class method) (genome_spy.LegendRegionAnchor class method) (genome_spy.LegendRegionLayout class method) (genome_spy.LegendResolutionBehavior class method) (genome_spy.LegendTitleOrient class method) (genome_spy.LerpTransition class method) (genome_spy.LinearizeGenomicCoordinateParams class method) (genome_spy.LinkConfig class method) (genome_spy.LinkProps class method) (genome_spy.LookupParams class method) (genome_spy.LookupSelfInput class method) (genome_spy.MarkConfig class method) (genome_spy.MarkPropDefNumber class method) (genome_spy.MarkPropDefStringNull class method) (genome_spy.MarkPropDefStringNullTypeForShape class method) (genome_spy.MarkPropExprDef class method) (genome_spy.MarkPropExprDefType class method) (genome_spy.MarkPropExprDefTypeForShape class method) (genome_spy.MarkProps class method) (genome_spy.MarkType class method) (genome_spy.MeasureTextParams class method) (genome_spy.MergeFacetsParams class method) (genome_spy.MultiscaleChart class method) (genome_spy.MultiscaleSpec class method) (genome_spy.MultiscaleStops class method) (genome_spy.MultiscaleStopsDef class method) (genome_spy.MultiUrlSourceRef class method) (genome_spy.NamedData class method) (genome_spy.NamedGenomeConfig class method) (genome_spy.NamedSelectionPredicateRef class method) (genome_spy.NumericDomain class method) (genome_spy.NumericMarkPropDef class method) (genome_spy.NumericStopDef class method) (genome_spy.NumericValueDef class method) (genome_spy.OffsetChannel class method) (genome_spy.OffsetDef class method) (genome_spy.OrderCondition class method) (genome_spy.OrderDef class method) (genome_spy.OtherDataFormat class method) (genome_spy.OverhangConfig class method) (genome_spy.PackLegendLabelsParams class method) (genome_spy.PaddingConfig class method) (genome_spy.Paddings class method) (genome_spy.Parameter class method) (genome_spy.ParameterPredicate class method) (genome_spy.ParamTransition class method) (genome_spy.Parse class method) (genome_spy.ParseValue class method) (genome_spy.PileupParams class method) (genome_spy.PlainExprParameter class method) (genome_spy.PlainValueParameter class method) (genome_spy.PointConfig class method) (genome_spy.PointProps class method) (genome_spy.Position2Def class method) (genome_spy.PositionalChannel class method) (genome_spy.PositionalIntervalSelectionParameter class method) (genome_spy.PositionDatumDef class method) (genome_spy.PositionDef class method) (genome_spy.PositionExprDef class method) (genome_spy.PositionFieldDef class method) (genome_spy.PositionValueDef class method) (genome_spy.PrimaryPositionalChannel class method) (genome_spy.ProjectParams class method) (genome_spy.RangeConfig class method) (genome_spy.RecordSelectionParameter class method) (genome_spy.RectConfig class method) (genome_spy.RectProps class method) (genome_spy.RegexExtractParams class method) (genome_spy.RegexFoldParams class method) (genome_spy.ResolutionBehavior class method) (genome_spy.ResolutionMapLegendResolutionBehavior class method) (genome_spy.ResolutionMapResolutionBehavior class method) (genome_spy.Root class method) (genome_spy.RuleConfig class method) (genome_spy.RuleProps class method) (genome_spy.RulerChannelValue class method) (genome_spy.RulerClear class method) (genome_spy.RulerConfig class method) (genome_spy.RulerDisplay class method) (genome_spy.RulerEventConfig class method) (genome_spy.RulerEventType class method) (genome_spy.RulerExtent class method) (genome_spy.RulerInitMapping class method) (genome_spy.RulerMarkConfig class method) (genome_spy.RulerParameter class method) (genome_spy.RulerSnap class method) (genome_spy.RulerSource class method) (genome_spy.SampleParams class method) (genome_spy.Scalar class method) (genome_spy.ScalarDomain class method) (genome_spy.Scale class method) (genome_spy.ScaleConfig class method) (genome_spy.ScaleGroupsData class method) (genome_spy.ScaleInterpolate class method) (genome_spy.ScaleInterpolateParams class method) (genome_spy.ScaleType class method) (genome_spy.SchemeParams class method) (genome_spy.SearchDef class method) (genome_spy.SecondaryChromPosDef class method) (genome_spy.SecondaryOffsetChannel class method) (genome_spy.SecondaryOffsetDef class method) (genome_spy.SecondaryPositionalChannel class method) (genome_spy.SelectionDomainRef class method) (genome_spy.SelectionExtent class method) (genome_spy.SelectionFilterParams class method) (genome_spy.SelectionInitIntervalMapping class method) (genome_spy.SelectionParameter class method) (genome_spy.SelectionPredicateDefinition class method) (genome_spy.SelectionPredicateOperand class method) (genome_spy.SelectionUnionTest class method) (genome_spy.SeparatorProps class method) (genome_spy.SequenceGenerator class method) (genome_spy.SequenceParams class method) (genome_spy.SetIntersectionParams class method) (genome_spy.ShapeDef class method) (genome_spy.SiblingOrderedDendrogramParams class method) (genome_spy.SingleUrlSourceRef class method) (genome_spy.SizeDef class method) (genome_spy.SortOrder class method) (genome_spy.StackParams class method) (genome_spy.Step class method) (genome_spy.StringDatumDef class method) (genome_spy.StringFieldDef class method) (genome_spy.StrokeAlign class method) (genome_spy.StyleConfig class method) (genome_spy.SurroundChart class method) (genome_spy.SurroundPlotSpec class method) (genome_spy.SurroundSide class method) (genome_spy.SurroundSides class method) (genome_spy.SurroundSideSpec class method) (genome_spy.SurroundSpec class method) (genome_spy.TabixTsvData class method) (genome_spy.TemplateImport class method) (genome_spy.TextConfig class method) (genome_spy.TextDef class method) (genome_spy.TextProps class method) (genome_spy.TickConfig class method) (genome_spy.TickProps class method) (genome_spy.Title class method) (genome_spy.TitleAnchor class method) (genome_spy.TitleConfig class method) (genome_spy.TitleFrame class method) (genome_spy.TitleOrient class method) (genome_spy.TooltipDef class method) (genome_spy.TransformOutput class method) (genome_spy.TransformParams class method) (genome_spy.TransitionedExprParameter class method) (genome_spy.TransitionedMultiscaleStops class method) (genome_spy.TransitionedValueParameter class method) (genome_spy.TruncateTextParams class method) (genome_spy.Type class method) (genome_spy.TypeForShape class method) (genome_spy.UnitSpec class method) (genome_spy.UrlData class method) (genome_spy.UrlGenomeConfig class method) (genome_spy.UrlGenomeDefinition class method) (genome_spy.UrlImport class method) (genome_spy.UrlList class method) (genome_spy.UrlSourceRef class method) (genome_spy.UrlTemplate class method) (genome_spy.ValueDefArrowDirection class method) (genome_spy.ValueDefNumber class method) (genome_spy.ValueDefString class method) (genome_spy.ValueDefWithConditionNumberType class method) (genome_spy.ValueDefWithConditionStringNullType class method) (genome_spy.ValueDefWithConditionStringNullTypeForShape class method) (genome_spy.ValueParameter class method) (genome_spy.ValuesParams class method) (genome_spy.VariableParameter class method) (genome_spy.VcfData class method) (genome_spy.VcfDataFormat class method) (genome_spy.VConcatChart class method) (genome_spy.VConcatSpec class method) (genome_spy.ViewBackground class method) (genome_spy.ViewConfig class method) (genome_spy.ViewOpacityDef class method) (genome_spy.ViewportDomainRef class method) (genome_spy.ViewportSizeDef class method) (genome_spy.ViewSpec class method) (genome_spy.WigDataFormat class method) (genome_spy.WindowOnlyOp class method) (genome_spy.WindowOp class method) (genome_spy.WindowParams class method) (genome_spy.ZoomParams class method) value() (genome_spy.Angle method) (genome_spy.CategorySelectionParameterColor method) (genome_spy.CategorySelectionParameterFill method) (genome_spy.CategorySelectionParameterShape method) (genome_spy.CategorySelectionParameterStroke method) (genome_spy.CategorySelectionParameterX method) (genome_spy.CategorySelectionParameterY method) (genome_spy.Color method) (genome_spy.ColorDef method) (genome_spy.ConditionalParameterValueDefNumberExprRef method) (genome_spy.ConditionalParameterValueDefStringNullExprRef method) (genome_spy.ConditionalTestValueDefNumberExprRef method) (genome_spy.ConditionalTestValueDefStringNullExprRef method) (genome_spy.ConditionalValueDefNumberExprRef method) (genome_spy.ConditionalValueDefStringNullExprRef method) (genome_spy.Direction method) (genome_spy.DirectionDef method) (genome_spy.Dx method) (genome_spy.Dy method) (genome_spy.Fill method) (genome_spy.FillOpacity method) (genome_spy.GradientIntervalSelectionParameterColor method) (genome_spy.GradientIntervalSelectionParameterFill method) (genome_spy.GradientIntervalSelectionParameterStroke method) (genome_spy.IntervalSelectionParameter method) (genome_spy.MarkPropDefNumber method) (genome_spy.MarkPropDefStringNull method) (genome_spy.MarkPropDefStringNullTypeForShape method) (genome_spy.NumericMarkPropDef method) (genome_spy.NumericValueDef method) (genome_spy.OffsetDef method) (genome_spy.Opacity method) (genome_spy.Order method) (genome_spy.OrderCondition method) (genome_spy.OrderDef method) (genome_spy.PlainValueParameter method) (genome_spy.Position2Def method) (genome_spy.PositionalIntervalSelectionParameter method) (genome_spy.PositionDef method) (genome_spy.PositionValueDef method) (genome_spy.RulerParameter method) (genome_spy.SecondaryOffsetDef method) (genome_spy.SelectionParameter method) (genome_spy.Shape method) (genome_spy.ShapeDef method) (genome_spy.Size method) (genome_spy.Stroke method) (genome_spy.StrokeOpacity method) (genome_spy.StrokeWidth method) (genome_spy.Text method) (genome_spy.TextDef method) (genome_spy.Tooltip method) (genome_spy.TooltipDef method) (genome_spy.TransitionedValueParameter method) (genome_spy.ValueDefArrowDirection method) (genome_spy.ValueDefNumber method) (genome_spy.ValueDefString method) (genome_spy.ValueDefWithConditionNumberType method) (genome_spy.ValueDefWithConditionStringNullType method) (genome_spy.ValueDefWithConditionStringNullTypeForShape method) (genome_spy.ValueParameter method) (genome_spy.VariableParameter method) (genome_spy.X method) (genome_spy.X2 method) (genome_spy.X2Offset method) (genome_spy.XOffset method) (genome_spy.Y method) (genome_spy.Y2 method) (genome_spy.Y2Offset method) (genome_spy.YOffset method) (in module genome_spy) ValueDefArrowDirection (class in genome_spy) ValueDefNumber (class in genome_spy) ValueDefString (class in genome_spy) ValueDefWithConditionNumberType (class in genome_spy) ValueDefWithConditionStringNullType (class in genome_spy) ValueDefWithConditionStringNullTypeForShape (class in genome_spy) ValueParameter (class in genome_spy) values() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.CoordinateLookupParams method) (genome_spy.CrossData method) (genome_spy.Data method) (genome_spy.DataSource method) (genome_spy.DynamicOpacity method) (genome_spy.FadedMultiscaleStops method) (genome_spy.GenomeAxis method) (genome_spy.InlineData method) (genome_spy.LazyDataParams method) (genome_spy.Legend method) (genome_spy.LegendConfig method) (genome_spy.LookupParams method) (genome_spy.MultiscaleStops method) (genome_spy.MultiscaleStopsDef method) (genome_spy.MultiUrlSourceRef method) (genome_spy.SingleUrlSourceRef method) (genome_spy.StyleConfig method) (genome_spy.TransformParams method) (genome_spy.TransitionedMultiscaleStops method) (genome_spy.UrlSourceRef method) (genome_spy.UrlTemplate method) (genome_spy.ViewOpacityDef method) ValuesParams (class in genome_spy) VariableParameter (class in genome_spy) vcf() (genome_spy.data.LazyNamespace method) VcfData (class in genome_spy) VcfDataFormat (class in genome_spy) vconcat() (genome_spy.CoreRootSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) (in module genome_spy) VConcatChart (class in genome_spy) VConcatSpec (class in genome_spy) view() (genome_spy.Chart method) (genome_spy.CoreRootSpec method) (genome_spy.GenomeSpyConfig method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SurroundPlotSpec method) (genome_spy.UnitSpec method) (genome_spy.ViewSpec method) (in module genome_spy) view_config() (in module genome_spy) ViewBackground (class in genome_spy) ViewConfig (class in genome_spy) ViewOpacityDef (class in genome_spy) viewport() (genome_spy.Scale method) (genome_spy.ScaleConfig method) ViewportDomainRef (class in genome_spy) viewportEdgeFadeDistanceBottom() (genome_spy.MarkProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) viewportEdgeFadeDistanceLeft() (genome_spy.MarkProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) viewportEdgeFadeDistanceRight() (genome_spy.MarkProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) viewportEdgeFadeDistanceTop() (genome_spy.MarkProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) viewportEdgeFadeWidthBottom() (genome_spy.MarkProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) viewportEdgeFadeWidthLeft() (genome_spy.MarkProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) viewportEdgeFadeWidthRight() (genome_spy.MarkProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) viewportEdgeFadeWidthTop() (genome_spy.MarkProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) viewportHeight() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SurroundPlotSpec method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) ViewportSizeDef (class in genome_spy) viewportWidth() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SurroundPlotSpec method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) views() (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) ViewSpec (class in genome_spy) visible() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.ImportedView method) (genome_spy.ImportSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) W weight() (genome_spy.CoverageParams method) (genome_spy.TransformParams method) when() (in module genome_spy) widget() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) width() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.Displace2DParams method) (genome_spy.FacetChart method) (genome_spy.FacetSpec method) (genome_spy.FilterScoredLabelsParams method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSpec method) (genome_spy.TransformParams method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewSpec method) WigDataFormat (class in genome_spy) WindowOnlyOp (class in genome_spy) WindowOp (class in genome_spy) WindowParams (class in genome_spy) windowSize() (genome_spy.BamData method) (genome_spy.BigBedData method) (genome_spy.Gff3Data method) (genome_spy.IndexedFastaData method) (genome_spy.LazyDataParams method) (genome_spy.TabixTsvData method) (genome_spy.VcfData method) with_config() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) with_scales() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) with_view() (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.FacetChart method) (genome_spy.HConcatChart method) (genome_spy.LayerChart method) (genome_spy.MultiscaleChart method) (genome_spy.SurroundChart method) (genome_spy.TopLevelSpec method) (genome_spy.VConcatChart method) wrap() (genome_spy.LegendLayout method) (genome_spy.LegendRegionLayout method) X X (class in genome_spy) x() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.Displace2DParams method) (genome_spy.Encoding method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkConfig method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.RulerInitMapping method) (genome_spy.SelectionInitIntervalMapping method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.TickConfig method) (genome_spy.TickProps method) (genome_spy.TransformParams method) X2 (class in genome_spy) x2() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.Encoding method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) X2Offset (class in genome_spy) x2Offset() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.Encoding method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkConfig method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.TickConfig method) (genome_spy.TickProps method) XOffset (class in genome_spy) xOffset() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.Encoding method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkConfig method) (genome_spy.MarkProps method) (genome_spy.PackLegendLabelsParams method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.TickConfig method) (genome_spy.TickProps method) (genome_spy.TransformParams method) Y Y (class in genome_spy) y() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.Displace2DParams method) (genome_spy.Encoding method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkConfig method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.RulerInitMapping method) (genome_spy.SelectionInitIntervalMapping method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.TickConfig method) (genome_spy.TickProps method) (genome_spy.TransformParams method) Y2 (class in genome_spy) y2() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.Encoding method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) Y2Offset (class in genome_spy) y2Offset() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.Encoding method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkConfig method) (genome_spy.MarkProps method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.TickConfig method) (genome_spy.TickProps method) yExtent() (genome_spy.PackLegendLabelsParams method) (genome_spy.TransformParams method) YOffset (class in genome_spy) yOffset() (genome_spy.ArrowConfig method) (genome_spy.ArrowProps method) (genome_spy.Encoding method) (genome_spy.LinkConfig method) (genome_spy.LinkProps method) (genome_spy.MarkConfig method) (genome_spy.MarkProps method) (genome_spy.PackLegendLabelsParams method) (genome_spy.PointConfig method) (genome_spy.PointProps method) (genome_spy.RectConfig method) (genome_spy.RectProps method) (genome_spy.ResolutionMapLegendResolutionBehavior method) (genome_spy.ResolutionMapResolutionBehavior method) (genome_spy.RuleConfig method) (genome_spy.RuleProps method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.TextConfig method) (genome_spy.TextProps method) (genome_spy.TickConfig method) (genome_spy.TickProps method) (genome_spy.TransformParams method) Z zero() (genome_spy.Scale method) (genome_spy.ScaleConfig method) zfill() (genome_spy.Expression method) zindex() (genome_spy.Axis method) (genome_spy.AxisConfig method) (genome_spy.BrushConfig method) (genome_spy.Chart method) (genome_spy.ConcatChart method) (genome_spy.ConcatSpec method) (genome_spy.CoreRootSpec method) (genome_spy.FacetChart method) (genome_spy.FacetHeader method) (genome_spy.FacetSpec method) (genome_spy.GenomeAxis method) (genome_spy.HConcatChart method) (genome_spy.HConcatSpec method) (genome_spy.ImportedView method) (genome_spy.ImportSpec method) (genome_spy.LayerChart method) (genome_spy.LayerSpec method) (genome_spy.MultiscaleChart method) (genome_spy.MultiscaleSpec method) (genome_spy.RulerMarkConfig method) (genome_spy.SeparatorProps method) (genome_spy.StyleConfig method) (genome_spy.SurroundChart method) (genome_spy.SurroundPlotSpec method) (genome_spy.SurroundSide method) (genome_spy.SurroundSideSpec method) (genome_spy.SurroundSpec method) (genome_spy.Title method) (genome_spy.TitleConfig method) (genome_spy.UnitSpec method) (genome_spy.VConcatChart method) (genome_spy.VConcatSpec method) (genome_spy.ViewBackground method) (genome_spy.ViewConfig method) (genome_spy.ViewSpec method) zoom() (genome_spy.Scale method) (genome_spy.ScaleConfig method) zoomLevel() (genome_spy.expr class method) ZoomParams (class in genome_spy)